Hg_chrom3_TN10mRNA_6301
Organism: Heterodera glycines Gene Locus: chr3:9669866-9674069 Feature type: polypeptideProtein Sequence
Length: 586
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.615 | 0.992 | 0.9 | 0.53 | 0.939 | 0.831 | 0.894 | 0.939 | 0.834 | 1.107 | 0.621 | 1.305 | 0.995 | 1.805 | 1.428 | 0.975 | 1.119 | 1.06 | 1.838 | 1.305 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5977
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
extracellular
|
— |
KLRGVRGPPGGKGPPGPVGPTGRRGPS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.101
|
0.044
|
0.007
|
0.203
|
0.372
|
0.276
|
0.532
|
0.027
|
0.524
|
0.617
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008140
|
1.000
|
1.000
|
Hsc_gene_15420.t1
|
Hsc_gene_15420.t1
|
— |
Q68BL8.2 Olfactomedin-like protein 2B [Homo sapiens]
|
KAH7724856.1 Olfactomedin-like [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.863|GO:0009987_0.775|GO:0005575_0.738|GO:0110165_0.732|GO:0065007_0.616|GO:0050789_0.579|GO:0050794_0.563|GO:0016020_0.536
|
IPR003112+302-571_303-571_305-568+|IPR050605+128-572+
|
SM00284+303-571+
|
PF02191+305-568+Olfactomedin-like_domain
|
— |
PTHR23192+128-572+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
108-310
|
2.000
|
1-107;311-586
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.873
|
66033.990
|
8.032
|
8.500
|
23.549
|
12.287
|
44.710
|
55.290
|
12.969
|
10.580
|
53.584
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
309.162
|
41.857
|
116.752
|
31.247
|
15.617
|
44.391
|
46.260
|
102.150
|
26.260
|
1183.537
|
687.561
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.251
|
-0.559
|
-1.792
|
-1.036
|
1.525
|
— |
1.096
|
-0.998
|
-5.618
|
— |
-5.880
|
— | — |
No JSON data available for plots.