SCN Proteipedia

Hg_chrom3_TN10mRNA_6302

Organism: Heterodera glycines Gene Locus: chr3:9674704-9677903 Feature type: polypeptide

Protein Sequence

Length: 542 (Signal peptide: 1-25)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.837	1.63	0.839	0.382	1.322	0.946	0.593	1.384	1.558	1.346	0.895	1.628	1.333	0.852	1.017	0.843	0.847	1.034	0.568	0.651	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5978	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	Hsc_gene_15421	Hsc_gene_15399	—	21-pJ2_J3	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	—	cytoplasm\|nucleus	—	—	—	—	—	—	1-25	0.848	1.000	0.000	0.000	0.535	0.254	0.098	0.651	0.148	0.175	0.151	0.029	0.127	0.196

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008141	1.000	1.000	Hsc_gene_15421.t1	Hsc_gene_15399.t1;Hsc_gene_15421.t1	—	Q54E83.1 Glutathione synthetase [Dictyostelium discoideum]	5OEU_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEU_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEV_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_B Chain B, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_D Chain D, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida]	No	-0.020

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004363\|GO:0005524\|GO:0006750\|GO:0016874	GO:0008150_0.949\|GO:0003674_0.846\|GO:0008152_0.779\|GO:0009987_0.754\|GO:0050896_0.699\|GO:0005575_0.683\|GO:0110165_0.676\|GO:0044237_0.629\|GO:0003824_0.618\|GO:0009058_0.617\|GO:0044249_0.604\|GO:0006790_0.545\|GO:0006518_0.542\|GO:0006575_0.542\|GO:0006749_0.542\|GO:0006750_0.542\|GO:0019184_0.542\|GO:0042398_0.542\|GO:0043043_0.542\|GO:0043603_0.542\|GO:0043604_0.542\|GO:0044272_0.542\|GO:0016874_0.530\|GO:0004363_0.526\|GO:0016879_0.526\|GO:0016881_0.526\|GO:1904091_0.526\|GO:0042221_0.502	IPR004887+261-361+\|IPR005615+39-542_52-541_60-541+\|IPR014042+120-403+\|IPR014049+63-483+\|IPR014709+404-471+\|IPR016185+260-362+\|IPR037013+239-367+	—	PF03199+261-361+Eukaryotic_glutathione_synthase\|PF03917+60-541+Eukaryotic_glutathione_synthase,_ATP_binding_domain	—	PTHR11130+52-541+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-542	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.587	61177.080	6.350	-1.500	26.199	10.517	47.970	52.030	13.653	12.546	47.232

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	pink	2658.476	10.829	66.247	4954.947	3311.035	259.989	349.731	100.845	1787.500	6895.098	4706.128

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.385	8.697	6.334	-0.613	-3.656	0.438	-1.476	1.936	—	—	—	—	—

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