Hg_chrom3_TN10mRNA_6306
Organism: Heterodera glycines Gene Locus: chr3:9716252-9717759 Feature type: polypeptideProtein Sequence
Length: 208
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.342 | 0.894 | 0.35 | 0.663 | 1.122 | 1.972 | 0.916 | 1.683 | 0.962 | 0.975 | 0.728 | 1.131 | 1.736 | 0.37 | 2.159 | 0.755 | 0.709 | 0.874 | 0.74 | 0.566 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5982
|
— | — |
1.333
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRRRR,RTSKRRR
|
36-65
|
0.992
|
— | — | — | — |
0.000
|
— | — |
0.280
|
0.488
|
0.173
|
0.566
|
0.200
|
0.312
|
0.293
|
0.078
|
0.094
|
0.611
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000824
|
4.000
|
2.000
|
Hsc_gene_15385.t1;Hsc_gene_15410.t1
|
— | — |
Q29471.2 Annexin A13 [Canis lupus familiaris]
|
ACN93668.1 annexin 4F01 [Heterodera schachtii]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005544
|
GO:0005575_0.887|GO:0110165_0.881|GO:0008150_0.762|GO:0016020_0.748|GO:0005622_0.697|GO:0003674_0.696|GO:0043226_0.683|GO:0009987_0.652|GO:0043227_0.643|GO:0071944_0.641|GO:0005737_0.614|GO:0043229_0.606|GO:0005488_0.604|GO:0005886_0.573|GO:0043231_0.563|GO:0065007_0.513
|
IPR018252+85-137+|IPR018502+59-139_80-137_85-137+|IPR037104+1-158_4-54_62-143+
|
SM00335+85-137+
|
PF00191+80-137+Annexin
|
— |
PTHR10502+4-158+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-208
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.515
|
23582.930
|
10.832
|
17.500
|
27.404
|
12.500
|
48.558
|
51.442
|
18.750
|
8.654
|
44.231
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
976.945
|
4.867
|
20.013
|
169.801
|
137.646
|
18.562
|
52.580
|
63.309
|
632.774
|
3624.510
|
2342.338
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.818
|
4.981
|
3.187
|
-0.334
|
-2.877
|
1.513
|
1.661
|
— | — | — |
-4.594
|
— | — |
No JSON data available for plots.