Hg_chrom3_TN10mRNA_6307
Organism: Heterodera glycines Gene Locus: chr3:9720019-9720556 Feature type: polypeptideProtein Sequence
Length: 93
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.125 | 1.0 | 0.391 | 0.742 | 0.896 | 1.93 | 0.64 | 4.301 | 1.912 | 1.744 | 1.303 | 0.633 | 0.896 | 0.414 | 0.439 | 0.614 | 0.881 | 0.978 | 0.0 | 0.0 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5983
|
— | — |
2.222
|
2.000
|
3.000
|
3.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
4C10|MT0123371#tn20jg20630t1
|
Hsc_gene_15385;Hsc_gene_15410
|
— | — |
21-pJ2_J3
|
0.967
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
nucleus
|
— | — | — | — | — | — |
1-21
|
0.963
|
1.000
|
0.000
|
0.000
|
0.521
|
0.578
|
0.203
|
0.403
|
0.169
|
0.230
|
0.079
|
0.094
|
0.225
|
0.405
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000824
|
4.000
|
2.000
|
Hsc_gene_15385.t1;Hsc_gene_15410.t1
|
Hsc_gene_15385.t1;Hsc_gene_15410.t1
|
— | — |
QLK97565.1 annexin [Heterodera glycines]
|
HOJ47766
|
0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005544
|
— |
IPR018502+38-82+|IPR037104+18-83_24-90+
|
— |
PF00191+38-82+Annexin
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-93
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.670
|
10292.020
|
9.348
|
7.000
|
26.882
|
11.828
|
48.387
|
51.613
|
19.355
|
7.527
|
41.935
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
18.387
|
1.303
|
1.835
|
51.330
|
72.780
|
6.654
|
25.855
|
13.401
|
7.602
|
9.807
|
8.862
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
5.164
|
4.921
|
0.473
|
-3.439
|
1.973
|
— |
1.096
|
— | — | — | — | — |