Hg_chrom3_TN10mRNA_6308
Organism: Heterodera glycines Gene Locus: chr3:9721119-9721707 Feature type: polypeptideProtein Sequence
Length: 136
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.855 | 1.539 | 0.535 | 0.507 | 0.735 | 1.131 | 1.05 | 1.103 | 1.471 | 0.994 | 0.446 | 3.028 | 0.817 | 0.707 | 2.101 | 0.525 | 1.205 | 0.891 | 3.959 | 0.216 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5984
|
— | — |
3.889
|
4.000
|
4.000
|
2.000
|
5.000
|
4.000
|
3.000
|
3.000
|
4.000
|
5.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — |
VAP2|AY0286391#X12jg8256t1
|
Hsc_gene_15470;Hsc_gene_15409
|
— | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — |
24-44
|
0.975
|
— | — | — | — |
0.000
|
— | — |
0.368
|
0.369
|
0.021
|
0.410
|
0.156
|
0.021
|
0.104
|
0.085
|
0.281
|
0.747
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000200
|
7.000
|
4.000
|
Hsc_gene_15418.t1;Hsc_gene_15418.t2;Hsc_gene_15418.t3;Hsc_gene_15418.t4
|
Hsc_gene_15386.t1;Hsc_gene_15409.t1;Hsc_gene_15409.t2;Hsc_gene_15418.t1;Hsc_gene_15418.t2;Hsc_gene_15418.t3;Hsc_gene_15418.t4;Hsc_gene_15470.t1
|
— |
P10737.3 Venom allergen 5.02 [Dolichovespula maculata]
|
AAK21961.1 secreted venom allergen-like protein vap2 [Heterodera glycines]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576
|
— |
IPR014044+55-92+|IPR018244+63-73+|IPR035940+41-97_56-93+
|
— |
PF00188+55-92+Cysteine-rich_secretory_protein_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
126-136
|
1.000
|
1-125
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
15610.050
|
11.353
|
9.500
|
22.794
|
11.029
|
44.853
|
55.147
|
15.441
|
7.353
|
47.794
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
darkgreen
|
2500.339
|
2.892
|
838.008
|
51.371
|
5.810
|
106.992
|
7.006
|
3149.497
|
12466.474
|
28.538
|
5359.082
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7.945
|
4.008
|
-3.920
|
-3.170
|
4.211
|
-3.923
|
4.778
|
-8.671
|
8.567
|
-7.805
|
— | — | — |
No JSON data available for plots.