Hg_chrom3_TN10mRNA_6309
Organism: Heterodera glycines Gene Locus: chr3:9726282-9729953 Feature type: polypeptideProtein Sequence
Length: 515
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.881 | 1.264 | 0.883 | 1.138 | 1.327 | 0.896 | 0.67 | 0.874 | 1.597 | 1.076 | 0.883 | 1.485 | 1.942 | 0.56 | 0.872 | 1.054 | 0.732 | 1.03 | 1.344 | 0.571 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5985
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.533
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.510
|
0.173
|
0.013
|
0.576
|
0.166
|
0.221
|
0.076
|
0.017
|
0.104
|
0.171
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001221
|
4.000
|
1.000
|
Hsc_gene_15390.t1
|
Hsc_gene_15390.t1
|
— |
Q5TZE1.1 BTB/POZ domain-containing protein 6-B [Danio rerio]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.773|GO:0110165_0.767|GO:0008150_0.709|GO:0005622_0.641|GO:0005737_0.587|GO:0009987_0.587|GO:0043226_0.550|GO:0043229_0.532|GO:0016020_0.509
|
IPR000210+3-108_11-88_11-119+|IPR002083+277-413_281-411+|IPR008974+269-422+|IPR011333+1-146_2-108+|IPR011705+123-233_126-230+
|
SM00225+11-119+|SM00875+123-233+
|
PF00651+3-108+BTB/POZ_domain|PF07707+126-230+BTB_And_C-terminal_Kelch|PF22486+281-411+MATH_domain
|
— |
PTHR45774+4-259+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-515
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.522
|
58084.530
|
5.090
|
-9.500
|
24.660
|
12.427
|
45.437
|
54.563
|
11.845
|
12.816
|
48.350
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
41.711
|
4.005
|
5.834
|
71.686
|
24.743
|
12.276
|
65.421
|
13.514
|
1.382
|
107.394
|
61.960
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
4.031
|
3.727
|
-1.568
|
-0.995
|
2.423
|
— |
2.418
|
— |
6.029
|
— | — | — |
No JSON data available for plots.