SCN Proteipedia

Hg_chrom3_TN10mRNA_6315

Organism: Heterodera glycines Gene Locus: chr3:9742658-9750388 Feature type: polypeptide

Protein Sequence

Length: 670

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.92	1.041	0.787	0.463	1.443	3.368	0.48	0.672	0.862	1.372	0.724	2.195	1.036	0.689	1.462	0.81	0.832	0.611	0.804	0.571	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5989	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-Not_Clustered	0.744

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	RRRR,RKGFTCWLQMDKRIKD	—	—	—	—	—	—	0.000	—	—	0.315	0.142	0.016	0.633	0.077	0.261	0.275	0.014	0.569	0.064

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003672	2.000	1.000	Hsc_gene_15395.t1	Hsc_gene_15395.t1;Hsc_gene_15395.t2;Hsc_gene_15395.t3	—	P35241.1 Radixin [Homo sapiens]	KAF7631133.1 FERM domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003779\|GO:0005856\|GO:0008092	GO:0005575_0.901\|GO:0110165_0.898\|GO:0008150_0.855\|GO:0005622_0.840\|GO:0009987_0.797\|GO:0016020_0.788\|GO:0043226_0.772\|GO:0043229_0.725\|GO:0065007_0.723\|GO:0050789_0.707\|GO:0050794_0.691\|GO:0005886_0.688\|GO:0071944_0.688\|GO:0071840_0.643\|GO:0016043_0.640\|GO:0003674_0.617\|GO:0005488_0.617\|GO:0005737_0.613\|GO:0005515_0.599\|GO:0048518_0.577\|GO:0048522_0.566\|GO:0032502_0.564\|GO:0043228_0.545\|GO:0043232_0.545\|GO:0051179_0.541\|GO:0043227_0.527\|GO:0048856_0.527	IPR000299+15-322+\|IPR000798+28-47_82-101_126-147_311-330+\|IPR008954+580-664_582-664+\|IPR011174+9-663+\|IPR011259+588-664+\|IPR011993+230-322+\|IPR014352+97-228+\|IPR018979+19-80+\|IPR018980+239-325_239-326+\|IPR019747+205-234+\|IPR019748+106-235_111-227+\|IPR019749+11-235_48-60_117-130_130-150+\|IPR029071+13-100+\|IPR035963+104-227+	SM00295+11-235+\|SM01196+239-326+	PF00373+106-235+FERM_central_domain\|PF00769+588-664+Ezrin/radixin/moesin_family_C_terminal\|PF09379+19-80+FERM_N-terminal_domain\|PF09380+239-325+FERM_C-terminal_PH-like_domain	—	PTHR23281+9-663+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	326-670	1.000	1-325	4rm9_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.538	77386.490	6.120	-2.500	26.269	8.060	54.627	45.373	13.284	12.985	40.448

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	grey	1972.924	974.266	1597.877	1990.561	1983.728	3062.102	1696.052	3043.199	2480.918	1390.434	1857.784

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.485	0.894	0.425	—	0.641	-0.842	—	-0.703	—	—	—	—	—

No JSON data available for plots.

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