Hg_chrom3_TN10mRNA_6319
Organism: Heterodera glycines Gene Locus: chr3:9769902-9771887 Feature type: polypeptideProtein Sequence
Length: 281
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.241 | 2.069 | 1.1 | 1.841 | 0.83 | 1.004 | 0.932 | 0.712 | 0.395 | 0.625 | 0.917 | 1.675 | 1.285 | 0.753 | 0.508 | 1.017 | 1.342 | 0.324 | 3.011 | 0.942 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5992
|
— | — |
1.333
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
VAP2|AY028639.1#X12jg8256.t1
|
VAP2|AY0286391#X12jg8256t1
|
Hsc_gene_15470;Hsc_gene_15409
|
— |
Hg_chrom3_TN10mRNA_6319
|
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-16
|
0.977
|
0.827
|
0.000
|
0.000
|
0.199
|
0.163
|
0.066
|
0.345
|
0.110
|
0.033
|
0.036
|
0.035
|
0.188
|
0.949
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008145
|
1.000
|
1.000
|
Hsc_gene_15409.t1
|
Hsc_gene_15386.t1;Hsc_gene_15387.t1;Hsc_gene_15409.t1;Hsc_gene_15409.t2;Hsc_gene_15409.t3;Hsc_gene_15418.t1;Hsc_gene_15418.t2;Hsc_gene_15418.t3;Hsc_gene_15418.t4;Hsc_gene_15470.t1
|
— |
Q16937.1 Ancylostoma secreted protein [Ancylostoma caninum]
|
QLK97561.1 venom allergen [Heterodera glycines]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576
|
GO:0005575_0.795|GO:0110165_0.795|GO:0008150_0.684|GO:0016020_0.507
|
IPR001283+102-257_136-154_183-196_210-226_240-253+|IPR002413+93-109_136-154_209-228+|IPR014044+97-253_103-245+|IPR018244+211-221+|IPR035940+84-281_88-260+
|
SM00198+97-253+
|
PF00188+103-245+Cysteine-rich_secretory_protein_family
|
— |
PTHR10334+102-257+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-137
|
1.000
|
138-281
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
31046.290
|
4.957
|
-5.000
|
20.996
|
13.167
|
49.110
|
50.890
|
9.964
|
11.032
|
60.142
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
7419.896
|
12.193
|
3643.814
|
375.097
|
94.856
|
498.194
|
127.573
|
11494.910
|
34884.317
|
206.320
|
15068.319
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8.000
|
4.806
|
-3.175
|
-2.015
|
2.406
|
-1.953
|
4.428
|
-6.351
|
7.300
|
-6.425
|
— | — | — |