Hg_chrom3_TN10mRNA_6321
Organism: Heterodera glycines Gene Locus: chr3:9772442-9773001 Feature type: polypeptideProtein Sequence
Length: 131
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.799 | 0.533 | 1.11 | 0.263 | 1.654 | 1.37 | 0.454 | 2.672 | 1.357 | 1.444 | 1.272 | 2.245 | 1.06 | 0.294 | 1.091 | 0.545 | 2.002 | 0.578 | 0.0 | 0.0 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5993
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
4C10|MT0123371#tn20jg20630t1
|
Hsc_gene_15385;Hsc_gene_15410
|
— |
Hg_chrom3_TN10mRNA_6321
|
7-ppJ2
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KKHK,KKQFGTDLIAMLKKEFK
|
— | — | — | — |
1-21
|
0.954
|
1.000
|
0.000
|
0.000
|
0.310
|
0.239
|
0.026
|
0.416
|
0.055
|
0.188
|
0.029
|
0.030
|
0.104
|
0.609
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000824
|
4.000
|
2.000
|
Hsc_gene_15385.t1;Hsc_gene_15410.t1
|
Hsc_gene_15385.t1;Hsc_gene_15410.t1
|
— | — |
QLK97565.1 annexin [Heterodera glycines]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005544
|
GO:0005575_0.924|GO:0110165_0.920|GO:0016020_0.779|GO:0005622_0.735|GO:0005737_0.680|GO:0043226_0.679|GO:0071944_0.677|GO:0008150_0.652|GO:0043227_0.614|GO:0003674_0.609|GO:0009987_0.609|GO:0043229_0.593|GO:0005488_0.565|GO:0005886_0.565|GO:0043231_0.545|GO:0065007_0.530|GO:0050789_0.521
|
IPR018502+33-102_38-98_48-100+|IPR037104+19-99_34-99+
|
SM00335+48-100+
|
PF00191+38-98+Annexin
|
— |
PTHR10502+25-100+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
97-131
|
1.000
|
1-96
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.820
|
14972.100
|
6.607
|
0.500
|
35.115
|
9.160
|
58.779
|
41.221
|
19.084
|
16.031
|
41.221
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
46.392
|
41.767
|
67.853
|
49.210
|
42.486
|
30.609
|
42.777
|
58.399
|
53.656
|
37.811
|
44.602
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.471
|
— |
-0.355
|
— | — | — |
0.823
|
— | — | — | — | — | — |