SCN Proteipedia

Hg_chrom3_TN10mRNA_6323

Organism: Heterodera glycines Gene Locus: chr3:9782681-9789421 Feature type: polypeptide

Protein Sequence

Length: 668

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.923	1.044	0.789	0.465	1.447	3.263	0.463	0.749	0.898	1.376	0.703	2.025	0.998	0.691	1.497	0.813	0.859	0.635	0.806	0.616	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5995	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	Hg_chrom3_TN10mRNA_6323	22-Not_Clustered	0.841

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	RRRR,RKGFTCWLQMDKRIRD	—	—	—	—	—	—	0.000	—	—	0.305	0.142	0.018	0.626	0.077	0.268	0.291	0.016	0.565	0.062

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003672	2.000	1.000	Hsc_gene_15395.t1	Hsc_gene_15395.t1;Hsc_gene_15395.t2;Hsc_gene_15395.t3	—	P35241.1 Radixin [Homo sapiens]	KAF7631133.1 FERM domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003779\|GO:0005856\|GO:0008092	GO:0005575_0.913\|GO:0110165_0.910\|GO:0008150_0.868\|GO:0005622_0.850\|GO:0009987_0.811\|GO:0016020_0.799\|GO:0043226_0.770\|GO:0065007_0.733\|GO:0043229_0.719\|GO:0050789_0.719\|GO:0050794_0.701\|GO:0071944_0.700\|GO:0005886_0.699\|GO:0071840_0.654\|GO:0016043_0.652\|GO:0003674_0.615\|GO:0005488_0.615\|GO:0005737_0.612\|GO:0005515_0.598\|GO:0048518_0.585\|GO:0048522_0.581\|GO:0032502_0.559\|GO:0051179_0.556\|GO:0043228_0.542\|GO:0043232_0.542\|GO:0043227_0.527\|GO:0048856_0.522	IPR000299+15-319+\|IPR000798+28-47_82-101_126-147_308-327+\|IPR008954+578-662_580-662+\|IPR011174+9-661+\|IPR011259+586-662+\|IPR011993+227-319+\|IPR014352+97-225+\|IPR018979+19-80+\|IPR018980+236-322_236-323+\|IPR019747+202-231+\|IPR019748+106-232_111-224+\|IPR019749+11-232_48-60_117-130_130-150+\|IPR029071+13-100+\|IPR035963+104-224+	SM00295+11-232+\|SM01196+236-323+	PF00373+106-232+FERM_central_domain\|PF00769+586-662+Ezrin/radixin/moesin_family_C_terminal\|PF09379+19-80+FERM_N-terminal_domain\|PF09380+236-322+FERM_C-terminal_PH-like_domain	—	PTHR23281+9-661+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	323-668	1.000	1-322	3x23_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.542	77177.210	6.225	-2.000	26.497	8.234	54.641	45.359	13.473	13.024	40.719

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	darkorange	537.483	194.619	420.001	502.732	532.126	1021.767	658.883	1409.182	502.460	197.403	328.142

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.881	1.232	0.367	—	0.956	-0.623	—	-0.957	—	—	—	—	—

No JSON data available for plots.

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