Hg_chrom3_TN10mRNA_6326
Organism: Heterodera glycines Gene Locus: chr3:9797248-9798820 Feature type: polypeptideProtein Sequence
Length: 157
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.518 | 1.481 | 1.853 | 1.098 | 1.168 | 0.817 | 0.531 | 1.274 | 1.415 | 0.689 | 0.676 | 1.499 | 1.769 | 0.735 | 0.65 | 0.546 | 0.835 | 1.641 | 0.98 | 1.686 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5998
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_15393
|
Hg_chrom3_TN10mRNA_6326
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — |
1-20
|
0.997
|
1.000
|
0.000
|
0.000
|
0.633
|
0.423
|
0.074
|
0.419
|
0.063
|
0.111
|
0.060
|
0.077
|
0.235
|
0.141
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001222
|
4.000
|
1.000
|
Hsc_gene_15393.t1
|
Hsc_gene_15393.t1
|
— | — | — |
KAJ7796963
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
157-157
|
1.000
|
1-156
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.944
|
18174.400
|
4.159
|
-13.000
|
27.389
|
15.924
|
45.860
|
54.140
|
10.191
|
17.197
|
52.229
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
243.661
|
0.000
|
0.000
|
19.938
|
16.961
|
0.501
|
0.804
|
1.083
|
169.824
|
923.916
|
600.733
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
8.745
|
9.058
|
— |
-5.067
|
— | — | — | — | — |
-5.642
|
— | — |