Hg_chrom3_TN10mRNA_6328
Organism: Heterodera glycines Gene Locus: chr3:9805829-9809430 Feature type: polypeptideProtein Sequence
Length: 602
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.908 | 1.198 | 0.966 | 1.031 | 1.384 | 0.852 | 0.633 | 0.914 | 1.477 | 1.033 | 0.956 | 1.466 | 1.753 | 0.607 | 0.949 | 0.997 | 0.735 | 1.158 | 1.406 | 0.537 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6000
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.872
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.762
|
0.090
|
0.004
|
0.376
|
0.059
|
0.133
|
0.044
|
0.045
|
0.114
|
0.121
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001221
|
4.000
|
1.000
|
Hsc_gene_15390.t1
|
Hsc_gene_15390.t1
|
— |
Q5TZE1.1 BTB/POZ domain-containing protein 6-B [Danio rerio]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.779|GO:0110165_0.772|GO:0008150_0.711|GO:0005622_0.658|GO:0009987_0.628|GO:0005737_0.591|GO:0043226_0.566|GO:0003674_0.547|GO:0043229_0.547|GO:0016020_0.501
|
IPR000210+11-116_19-96_19-127+|IPR002083+285-421_287-403_289-423_442-577_447-556_447-577+|IPR008974+277-429_430-587+|IPR011333+2-154_4-116+|IPR011705+131-241_134-238+
|
SM00061+287-403_447-556+|SM00225+19-127+|SM00875+131-241+
|
PF00651+11-116+BTB/POZ_domain|PF07707+134-238+BTB_And_C-terminal_Kelch|PF22486+289-423_447-577+MATH_domain
|
— |
PTHR45774+6-268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-602
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.548
|
67959.770
|
5.176
|
-10.500
|
26.412
|
11.794
|
46.346
|
53.654
|
12.791
|
13.621
|
48.837
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
67.447
|
7.661
|
8.652
|
36.368
|
10.701
|
6.682
|
104.150
|
4.402
|
5.189
|
224.209
|
130.343
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.110
|
2.187
|
-1.805
|
— |
3.975
|
— |
4.705
|
— |
3.083
|
— | — | — |
No JSON data available for plots.