Hg_chrom3_TN10mRNA_6329
Organism: Heterodera glycines Gene Locus: chr3:9810151-9812470 Feature type: polypeptideProtein Sequence
Length: 434
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.991 | 1.018 | 0.628 | 0.636 | 0.845 | 0.886 | 0.631 | 1.843 | 0.87 | 1.308 | 1.117 | 1.762 | 2.176 | 1.019 | 1.035 | 1.317 | 0.567 | 0.838 | 0.886 | 0.813 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6001
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRQCNRVTVAAKKVSR,KKCDAIKKSAPKKEKT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.421
|
0.227
|
0.012
|
0.485
|
0.155
|
0.054
|
0.212
|
0.131
|
0.215
|
0.124
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000826
|
5.000
|
1.000
|
Hsc_gene_1980.t1
|
— | — | — |
KAI3415278.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.764|GO:0110165_0.732|GO:0008150_0.685|GO:0005622_0.679|GO:0043226_0.635|GO:0043229_0.626|GO:0016020_0.560|GO:0009987_0.554|GO:0003674_0.528|GO:0005737_0.511
|
IPR000210+21-100_21-131_22-126+|IPR011333+7-167_20-126+
|
SM00225+21-131+
|
PF00651+22-126+BTB/POZ_domain
|
— |
PTHR45774+21-171+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-434
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.857
|
49061.650
|
9.903
|
25.000
|
24.654
|
15.438
|
45.161
|
54.839
|
16.129
|
8.525
|
47.005
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
445.193
|
2.812
|
5.514
|
2.151
|
0.511
|
1.516
|
10.840
|
2.464
|
0.000
|
1938.040
|
1107.451
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
2.850
|
— |
2.271
|
-11.731
|
— |
-11.503
|
— | — |
No JSON data available for plots.