Hg_chrom3_TN10mRNA_6331
Organism: Heterodera glycines Gene Locus: chr3:9820847-9823045 Feature type: polypeptideProtein Sequence
Length: 350
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.196 | 0.997 | 0.571 | 0.296 | 1.381 | 1.465 | 0.51 | 2.143 | 1.587 | 1.39 | 0.909 | 1.176 | 1.508 | 0.385 | 1.341 | 0.898 | 1.077 | 0.693 | 0.659 | 0.336 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6003
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
4C10|MT012337.1#tn20jg20630.t1
|
4C10|MT0123371#tn20jg20630t1
|
Hsc_gene_15385;Hsc_gene_15410
|
— | — |
21-pJ2_J3
|
0.966
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
mitochondrion
|
nucleus
|
KKQFGTDLIAMLKKEFK,RRHQHNQLEEDIKAKTK
|
— | — | — | — |
1-21
|
0.955
|
1.000
|
0.000
|
0.000
|
0.317
|
0.486
|
0.019
|
0.473
|
0.188
|
0.273
|
0.182
|
0.133
|
0.159
|
0.356
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000824
|
4.000
|
2.000
|
Hsc_gene_15385.t1;Hsc_gene_15410.t1
|
Hsc_gene_15385.t1
|
— |
Q29471.2 Annexin A13 [Canis lupus familiaris]
|
QLK97565.1 annexin [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005544
|
GO:0005575_0.889|GO:0110165_0.889|GO:0016020_0.768|GO:0003674_0.746|GO:0008150_0.744|GO:0071944_0.687|GO:0009987_0.664|GO:0005622_0.662|GO:0043226_0.645|GO:0005488_0.630|GO:0005886_0.612|GO:0043227_0.599|GO:0005737_0.592|GO:0043229_0.548
|
IPR001464+45-67_85-101_197-223+|IPR018252+206-258+|IPR018502+33-102_38-100_48-100_103-176_107-174_118-174_188-260_194-258_206-258+|IPR037104+21-301_34-101_103-180_181-264+
|
SM00335+48-100_118-174_206-258+
|
PF00191+38-100_107-174_194-258+Annexin
|
G3DSA:1.10.220.10:FF:000002+179-264+Annexin
|
PTHR10502+25-281+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-350
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.583
|
39703.470
|
9.059
|
11.500
|
28.286
|
11.714
|
51.143
|
48.857
|
16.857
|
11.429
|
42.286
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
826.503
|
11.973
|
33.836
|
699.411
|
975.617
|
93.878
|
272.899
|
197.309
|
351.399
|
2495.553
|
1576.630
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.274
|
5.735
|
4.478
|
0.449
|
-3.363
|
1.550
|
0.957
|
0.613
|
— | — | — | — | — |