SCN Proteipedia

Hg_chrom3_TN10mRNA_6333

Organism: Heterodera glycines Gene Locus: chr3:9832289-9833882 Feature type: polypeptide

Protein Sequence

Length: 227

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.666	1.537	0.32	1.975	1.322	2.937	0.787	0.661	1.175	0.952	0.601	2.332	0.734	0.762	2.068	0.755	0.65	0.534	1.017	0.518	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_6005	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	17-ppJ2_pJ2	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	RPRR	—	—	—	—	—	—	0.000	—	—	0.787	0.091	0.010	0.482	0.030	0.014	0.032	0.010	0.029	0.054

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008147	1.000	1.000	Hsc_gene_15383.t1	Hsc_gene_15383.t1	—	P28699.2 Retinoic acid receptor gamma [Xenopus laevis]	KAH7716754.1 Protein NHR-36 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.919\|GO:0065007_0.804\|GO:0050789_0.801\|GO:0005575_0.800\|GO:0110165_0.798\|GO:0009987_0.797\|GO:0050794_0.788\|GO:0005622_0.753\|GO:0003674_0.695\|GO:0005488_0.695\|GO:0032502_0.655\|GO:0048856_0.655\|GO:0032501_0.649\|GO:0043226_0.647\|GO:0043229_0.622\|GO:0008152_0.598\|GO:0043170_0.598\|GO:0050896_0.597\|GO:0009058_0.593\|GO:0009059_0.593\|GO:0010467_0.593\|GO:0044237_0.593\|GO:0044249_0.593\|GO:0044238_0.589\|GO:0007275_0.579\|GO:0019222_0.576\|GO:0031323_0.576\|GO:0003676_0.573\|GO:0097159_0.573\|GO:0060255_0.561\|GO:0006139_0.560\|GO:0016070_0.560\|GO:0032774_0.560\|GO:0034654_0.560\|GO:0090304_0.560\|GO:0141187_0.560\|GO:0009889_0.552\|GO:0010556_0.552\|GO:0031326_0.552\|GO:0080090_0.552\|GO:0010468_0.543\|GO:0003677_0.539\|GO:0006351_0.532\|GO:0016020_0.525\|GO:0019219_0.517\|GO:0051252_0.509\|GO:2001141_0.501	IPR001628+115-185_115-189_118-134_118-183_134-149_166-174_174-182+\|IPR013088+110-218+\|IPR050234+110-197+	SM00399+115-185+	PF00105+118-183+Zinc_finger,_C4_type_(two_domains)	—	PTHR24082+110-197+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-23	1.000	24-227	5uan_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.793	26188.910	8.816	11.500	25.110	7.048	52.423	47.577	15.419	9.692	43.172

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	darkgreen	127.599	6.273	61.829	47.051	20.491	10.987	19.677	32.816	445.524	149.430	276.328

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	3.069	2.769	—	-1.236	-0.882	0.851	1.472	-0.595	3.329	-3.082	—	—	—

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