Hg_chrom3_TN10mRNA_6334
Organism: Heterodera glycines Gene Locus: chr3:9834951-9836174 Feature type: polypeptideProtein Sequence
Length: 247
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.412 | 1.036 | 1.031 | 0.14 | 1.619 | 0.934 | 1.06 | 1.417 | 1.26 | 1.04 | 0.184 | 3.096 | 0.675 | 0.545 | 1.239 | 0.752 | 1.062 | 1.043 | 0.311 | 0.595 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6006
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.519
|
0.318
|
0.017
|
0.531
|
0.085
|
0.126
|
0.092
|
0.003
|
0.292
|
0.201
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000555
|
5.000
|
2.000
|
Hsc_gene_12047.t1;Hsc_gene_20002.t1
|
— | — | — |
CDJ95205.1 Ankyrin domain containing protein, partial [Haemonchus contortus]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.821|GO:0003674_0.777|GO:0005575_0.689|GO:0110165_0.675|GO:0009987_0.564|GO:0065007_0.556|GO:0032501_0.527|GO:0005488_0.506|GO:0016020_0.504
|
IPR002110+80-109_80-112_114-144_119-209_148-177_148-180_181-210_181-213+|IPR036770+37-247_71-235+
|
SM00248+80-109_114-144_148-177_181-210+
|
PF00023+80-112+Ankyrin_repeat|PF12796+119-209+Ankyrin_repeats_(3_copies)
|
— |
PTHR24171+140-221+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24;183-247
|
1.000
|
25-182
|
5gik_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.846
|
26754.000
|
4.320
|
-16.500
|
25.506
|
7.692
|
45.344
|
54.656
|
10.121
|
15.385
|
53.036
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1195.689
|
4.923
|
11.063
|
25.612
|
115.830
|
3233.479
|
76.020
|
4893.797
|
0.000
|
2095.868
|
1197.639
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.246
|
1.318
|
2.147
|
4.816
|
-5.398
|
— |
-5.859
|
-11.843
|
5.536
|
— | — | — |
No JSON data available for plots.