Hg_chrom3_TN10mRNA_6343
Organism: Heterodera glycines Gene Locus: chr3:9884271-9897402 Feature type: polypeptideProtein Sequence
Length: 1,600
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.741 | 1.119 | 0.909 | 1.81 | 1.083 | 1.154 | 0.885 | 1.5 | 1.028 | 1.081 | 0.729 | 1.324 | 0.885 | 1.022 | 1.48 | 0.929 | 0.912 | 0.871 | 0.577 | 0.919 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6014
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RSLKRIK,RKRNKRK,RRRGGGSTTQRKKQG
|
1-21
|
0.992
|
16-50
|
0.899
|
— | — |
0.238
|
— | — |
0.094
|
0.078
|
0.011
|
0.266
|
0.208
|
0.502
|
0.386
|
0.038
|
0.829
|
0.193
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008150
|
1.000
|
1.000
|
Hsc_gene_15364.t1
|
Hsc_gene_15364.t1
|
— |
P24348.3 Receptor tyrosine-protein kinase let-23 [Caenorhabditis elegans]
|
KAI1717370.1 protein tyrosine kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004713|GO:0005524|GO:0006468
|
GO:0008150_0.986|GO:0065007_0.967|GO:0050789_0.955|GO:0009987_0.951|GO:0050794_0.945|GO:0050896_0.935|GO:0005575_0.909|GO:0003674_0.905|GO:0110165_0.902|GO:0023052_0.893|GO:0051716_0.891|GO:0007154_0.886|GO:0007165_0.869|GO:0048518_0.834|GO:0032501_0.813|GO:0032502_0.806|GO:0048856_0.806|GO:0005488_0.779|GO:0003824_0.767|GO:0140096_0.767|GO:0007166_0.763|GO:0016740_0.737|GO:0048522_0.736|GO:0005515_0.732|GO:0071944_0.715|GO:0007275_0.710|GO:0016020_0.682|GO:0005886_0.681|GO:0048731_0.679|GO:0008152_0.671|GO:0044237_0.666|GO:0016772_0.651|GO:0004672_0.648|GO:0016301_0.648|GO:0016773_0.648|GO:0043170_0.644|GO:0007167_0.636|GO:0010646_0.634|GO:0005622_0.629|GO:0023051_0.627|GO:0019222_0.609|GO:0007169_0.607|GO:0048519_0.607|GO:0031323_0.601|GO:0048583_0.596|GO:0048513_0.595|GO:0048523_0.580|GO:0048869_0.574|GO:0030154_0.571|GO:0009966_0.567|GO:0019538_0.567|GO:0044238_0.567|GO:0060255_0.546|GO:0007399_0.545|GO:0016043_0.532|GO:0071840_0.532|GO:0004713_0.524|GO:0098590_0.515|GO:0006793_0.506|GO:0006796_0.506|GO:0060089_0.506
|
IPR000494+113-239_437-572+|IPR000719+1034-1309+|IPR001245+1038-1297_1152-1170_1200-1210_1219-1241+|IPR006211+272-422+|IPR006212+266-308_314-358_317-350_589-642_653-717_659-723_719-779_796-852_891-943+|IPR008266+1158-1170+|IPR009030+273-421_598-736_798-950+|IPR011009+1038-1322+|IPR017441+1040-1067+|IPR020635+1034-1298+|IPR032778+598-739+|IPR036941+81-304_418-594+|IPR050122+652-1301+
|
SM00219+1034-1298+|SM00261+266-308_314-358_589-642_653-717_719-779_796-852_891-943+
|
PF00757+272-422+Furin-like_cysteine_rich_region|PF01030+113-239_437-572+Receptor_L_domain|PF07714+1038-1297+Protein_tyrosine_and_serine/threonine_kinase|PF14843+598-739+Growth_factor_receptor_domain_IV
|
G3DSA:1.10.510.10:FF:000027+1118-1314+Receptor_protein-tyrosine_kinase
|
PTHR24416+652-1301+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1356-1600
|
1.000
|
1-1355
|
5wno_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.783
|
178847.420
|
7.684
|
33.000
|
26.562
|
10.062
|
47.938
|
52.062
|
15.062
|
11.500
|
52.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
569.952
|
55.623
|
107.484
|
101.962
|
182.479
|
1053.854
|
2453.896
|
257.520
|
54.433
|
872.910
|
522.134
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.723
|
0.738
|
— |
0.806
|
2.544
|
1.229
|
-2.144
|
3.397
|
-4.148
|
— | — | — | — |
No JSON data available for plots.