Hg_chrom3_TN10mRNA_6344
Organism: Heterodera glycines Gene Locus: chr3:9900770-9902591 Feature type: polypeptideProtein Sequence
Length: 393
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.769 | 0.71 | 0.833 | 1.228 | 1.399 | 1.37 | 1.0 | 1.908 | 1.301 | 0.653 | 1.079 | 0.748 | 1.626 | 0.832 | 0.987 | 0.763 | 0.876 | 1.041 | 1.566 | 0.748 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6015
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
1-Not_Clustered
|
0.505
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-21
|
0.956
|
1.000
|
0.000
|
0.000
|
0.186
|
0.376
|
0.137
|
0.226
|
0.106
|
0.093
|
0.126
|
0.022
|
0.303
|
0.903
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008151
|
1.000
|
1.000
|
Hsc_gene_15363.t1
|
Hsc_gene_15363.t1
|
— |
Q9NAS9.1 CLIP domain-containing serine protease B15 [Anopheles gambiae]
|
KAI3411059.1 Serine protease [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0005575_0.806|GO:0110165_0.781|GO:0008150_0.691|GO:0003674_0.501
|
IPR001254+119-383_129-378_133-373+|IPR001314+166-181_243-257_330-342+|IPR009003+121-385+|IPR018114+176-181+|IPR043504+121-383+|IPR051487+112-386+
|
SM00020+129-378+
|
PF00089+133-373+Trypsin
|
— |
PTHR24256+112-386+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-393
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.588
|
44393.270
|
6.875
|
3.500
|
28.753
|
14.249
|
47.837
|
52.163
|
15.776
|
12.977
|
48.092
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
89.842
|
3.206
|
1.576
|
1.896
|
3.226
|
71.952
|
10.327
|
21.233
|
0.514
|
350.143
|
200.302
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
4.498
|
-2.794
|
-1.866
|
-0.901
|
— | — | — | — | — |