Hg_chrom3_TN10mRNA_6345
Organism: Heterodera glycines Gene Locus: chr3:9903835-9905992 Feature type: polypeptideProtein Sequence
Length: 353
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.482 | 0.527 | 0.515 | 1.27 | 0.944 | 1.598 | 2.428 | 0.567 | 0.441 | 0.306 | 0.429 | 1.0 | 0.315 | 3.487 | 0.52 | 0.931 | 0.464 | 0.343 | 0.218 | 0.75 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6016
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.511
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — |
37-117
|
0.731
|
— | — |
0.000
|
— | — |
0.046
|
0.047
|
0.006
|
0.138
|
0.543
|
0.307
|
0.392
|
0.002
|
0.632
|
0.222
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008152
|
1.000
|
1.000
|
Hsc_gene_15362.t1
|
Hsc_gene_15362.t1
|
— |
P18834.2 Cuticle collagen 14 [Caenorhabditis elegans]
|
KAF7640060.1 Col_cuticle_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+28-80_31-80+|IPR008160+213-269_279-337+|IPR050632+34-350+
|
SM01088+28-80+
|
PF01391+213-269_279-337+Collagen_triple_helix_repeat_(20_copies)|PF01484+31-80+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+34-350+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
93-353
|
1.000
|
1-92
|
9han_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.977
|
34116.430
|
4.559
|
-9.000
|
15.014
|
5.099
|
32.861
|
67.139
|
6.516
|
8.499
|
71.671
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1246.803
|
285.588
|
7.658
|
12.825
|
37.116
|
7709.484
|
43.374
|
3426.547
|
3.261
|
1131.344
|
647.880
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-5.449
|
-4.611
|
0.853
|
1.500
|
7.714
|
-7.465
|
-1.287
|
-6.157
|
-8.518
|
— |
-4.455
|
— | — |
No JSON data available for plots.