Hg_chrom3_TN10mRNA_6346
Organism: Heterodera glycines Gene Locus: chr3:9908394-9910193 Feature type: polypeptideProtein Sequence
Length: 263
(Signal peptide: 1-15)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.486 | 0.707 | 1.383 | 0.918 | 1.901 | 0.39 | 1.086 | 1.141 | 0.676 | 0.668 | 1.671 | 0.895 | 1.162 | 0.877 | 1.086 | 0.978 | 0.81 | 0.576 | 2.34 | 1.454 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6017
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KKEKEKHDKKEKKKRDKKE,EKHEKKEKEKHDKKEKKKRDKK
|
— | — | — | — |
1-15
|
0.998
|
1.000
|
0.000
|
0.000
|
0.382
|
0.238
|
0.015
|
0.340
|
0.161
|
0.088
|
0.103
|
0.001
|
0.102
|
0.815
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003439
|
2.000
|
1.000
|
Hsc_gene_15359.t1
|
Hsc_gene_15359.t1
|
— | — |
WKY03844.1 hypothetical protein Q1695_005082 [Nippostrongylus brasiliensis]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.924|GO:0005575_0.912|GO:0110165_0.909|GO:0003674_0.886|GO:0009987_0.872|GO:0005488_0.820|GO:0016020_0.812|GO:0008152_0.784|GO:0032501_0.769|GO:0032502_0.760|GO:0030154_0.721|GO:0048869_0.721|GO:0009056_0.696|GO:0001503_0.670|GO:0001649_0.670|GO:0030574_0.670|GO:0032963_0.670|GO:0044877_0.668|GO:0005518_0.650|GO:0030054_0.611|GO:0070161_0.559|GO:0005925_0.540|GO:0030055_0.540
|
IPR001304+19-205_37-195_50-123+|IPR016186+19-205+|IPR016187+4-196+|IPR050111+19-223+
|
SM00034+19-205+
|
PF00059+50-123+Lectin_C-type_domain
|
— |
PTHR22803+19-223+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
210-263
|
1.000
|
1-209
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.561
|
30387.760
|
5.518
|
-4.000
|
37.643
|
14.449
|
53.992
|
46.008
|
18.631
|
19.011
|
46.768
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
884.802
|
0.903
|
4.429
|
2.368
|
34.961
|
572.584
|
8.117
|
9619.186
|
0.514
|
29.668
|
17.174
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.064
|
— | — |
3.853
|
4.045
|
-6.132
|
3.970
|
-10.071
|
— | — | — | — | — |