Hg_chrom3_TN10mRNA_6348
Organism: Heterodera glycines Gene Locus: chr3:9914651-9919018 Feature type: polypeptideProtein Sequence
Length: 646
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.612 | 1.368 | 1.126 | 0.694 | 1.264 | 1.746 | 0.885 | 0.619 | 1.066 | 1.067 | 1.032 | 1.457 | 1.505 | 0.923 | 0.916 | 1.15 | 0.888 | 0.727 | 0.595 | 0.546 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6019
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.629
|
0.066
|
0.017
|
0.490
|
0.329
|
0.246
|
0.109
|
0.062
|
0.092
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001223
|
2.000
|
3.000
|
Hsc_gene_15357.t1;Hsc_gene_15357.t2;Hsc_gene_15357.t3
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.767|GO:0005575_0.718|GO:0110165_0.711|GO:0005622_0.673|GO:0005737_0.571|GO:0009987_0.567|GO:0016020_0.540|GO:0043226_0.516|GO:0043229_0.504
|
IPR001870+249-453_450-639+|IPR003877+332-452_335-450_515-638_518-636+|IPR013320+260-453_466-639+|IPR043136+254-461_462-646+|IPR044736+319-449_501-635+|IPR050618+186-459+
|
SM00449+332-452_515-638+
|
PF00622+335-450_518-636+SPRY_domain
|
— |
PTHR12864+186-459+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-208
|
1.000
|
209-646
|
8bv0_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.669
|
72253.100
|
5.011
|
-12.000
|
26.316
|
9.288
|
52.477
|
47.523
|
12.539
|
13.777
|
49.845
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
skyblue
|
110.865
|
25.820
|
69.947
|
37.068
|
31.526
|
53.684
|
694.773
|
59.744
|
10.189
|
112.681
|
68.756
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.204
|
— |
-0.805
|
— |
0.782
|
3.704
|
— |
3.682
|
— | — | — | — | — |
No JSON data available for plots.