Hg_chrom3_TN10mRNA_6350
Organism: Heterodera glycines Gene Locus: chr3:9924956-9926336 Feature type: polypeptideProtein Sequence
Length: 216
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.023 | 1.938 | 0.589 | 1.437 | 0.849 | 1.543 | 1.268 | 1.389 | 0.72 | 1.064 | 0.631 | 1.089 | 1.286 | 0.623 | 0.283 | 0.926 | 1.063 | 0.772 | 2.849 | 0.817 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6021
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_15354
|
— | — |
1-Not_Clustered
|
0.940
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-24
|
0.975
|
1.000
|
0.000
|
0.000
|
0.250
|
0.209
|
0.051
|
0.316
|
0.137
|
0.113
|
0.076
|
0.042
|
0.357
|
0.876
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008153
|
1.000
|
1.000
|
Hsc_gene_15354.t1
|
Hsc_gene_15354.t1
|
— |
P10737.3 Venom allergen 5.02 [Dolichovespula maculata]
|
AVA09702.1 putative effector protein [Heterodera avenae];AZL96421.1 venom allergen-like protein 2 [Heterodera avenae]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576
|
GO:0005575_0.827|GO:0110165_0.810|GO:0008150_0.654|GO:0071944_0.557|GO:0016020_0.535
|
IPR001283+33-185_67-85_142-158_171-184+|IPR002413+25-41_41-61_67-85_141-160+|IPR014044+29-184_39-176+|IPR018244+143-153_171-182+|IPR035940+21-213_23-188+
|
SM00198+29-184+
|
PF00188+39-176+Cysteine-rich_secretory_protein_family
|
— |
PTHR10334+33-185+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-216
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.732
|
23585.350
|
5.516
|
-3.000
|
16.667
|
13.889
|
43.981
|
56.019
|
8.333
|
8.333
|
56.481
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
skyblue
|
157.605
|
10.587
|
22.744
|
16.958
|
23.798
|
338.648
|
1141.539
|
106.704
|
0.691
|
66.135
|
38.088
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.872
|
— | — | — |
3.845
|
1.764
|
-1.768
|
3.561
|
— |
4.457
|
— | — | — |