Hg_chrom3_TN10mRNA_6355
Organism: Heterodera glycines Gene Locus: chr3:9947054-9952625 Feature type: polypeptideProtein Sequence
Length: 621
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.955 | 1.386 | 0.791 | 0.944 | 0.671 | 1.156 | 0.69 | 1.61 | 1.61 | 1.371 | 0.781 | 1.8 | 1.208 | 1.146 | 0.822 | 0.92 | 0.686 | 0.903 | 1.363 | 0.853 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6026
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRIR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.497
|
0.233
|
0.034
|
0.499
|
0.116
|
0.217
|
0.116
|
0.063
|
0.112
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001224
|
1.000
|
4.000
|
Hsc_gene_15350.t1;Hsc_gene_15350.t2;Hsc_gene_15350.t3;Hsc_gene_15350.t4
|
Hsc_gene_15350.t1;Hsc_gene_15350.t2;Hsc_gene_15350.t3;Hsc_gene_15350.t4;Hsc_gene_15351.t1
|
— |
Q06953.1 GDP-perosamine synthase [Vibrio cholerae]
|
OXA62418.1 putative polyketide synthase 6 [Folsomia candida]
|
MCE2740524
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.864|GO:0003674_0.796|GO:0003824_0.685|GO:0008152_0.651|GO:0016740_0.618|GO:0005488_0.610|GO:0009058_0.601|GO:0008483_0.570|GO:0016769_0.570|GO:0097159_0.525|GO:0036094_0.522|GO:0043167_0.514|GO:0009987_0.508
|
IPR000653+250-616_258-611+|IPR015421+233-492+|IPR015422+493-620+|IPR015424+246-617+
|
— |
PF01041+258-611+DegT/DnrJ/EryC1/StrS_aminotransferase_family
|
— |
PTHR30244+250-616+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-621
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.798
|
69390.360
|
8.061
|
15.000
|
20.773
|
12.238
|
41.868
|
58.132
|
12.399
|
8.374
|
49.597
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
603.882
|
11.258
|
1541.392
|
189.166
|
42.660
|
71.956
|
27.981
|
3853.940
|
119.392
|
400.555
|
280.057
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.872
|
3.934
|
-2.919
|
-2.182
|
0.768
|
-1.355
|
5.641
|
-6.966
|
— | — | — | — | — |
No JSON data available for plots.