Hg_chrom3_TN10mRNA_6356
Organism: Heterodera glycines Gene Locus: chr3:9952781-9954094 Feature type: polypeptideProtein Sequence
Length: 194
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.719 | 2.158 | 0.843 | 3.022 | 0.945 | 0.925 | 0.736 | 1.289 | 1.031 | 0.906 | 1.015 | 0.303 | 1.861 | 0.595 | 0.736 | 0.884 | 0.676 | 0.859 | 0.0 | 1.516 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6027
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-19
|
0.999
|
1.000
|
0.000
|
0.000
|
0.318
|
0.166
|
0.034
|
0.226
|
0.095
|
0.086
|
0.099
|
0.014
|
0.148
|
0.946
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002987
|
2.000
|
1.000
|
Hsc_gene_4443.t1
|
— | — |
P84875.1 Carboxypeptidase inhibitor SmCI [Sabellastarte magnifica]
|
KAI1714568.1 kunitz/Bovine pancreatic trypsin inhibitor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0005575_0.709|GO:0008150_0.709|GO:0110165_0.703|GO:0003674_0.597
|
IPR002223+15-77_17-76_25-76_51-61_136-192_137-192_138-191_176-191+|IPR006150+93-131+|IPR020901+54-72+|IPR036880+12-88_14-77_135-192_137-192+|IPR053014+24-192+
|
SM00131+15-77_136-192+|SM00289+93-131+
|
PF00014+25-76_137-192+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain
|
— |
PTHR46339+24-192+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-194
|
9p0x_K
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.772
|
21853.770
|
7.119
|
2.500
|
23.196
|
14.433
|
46.392
|
53.608
|
12.887
|
10.309
|
54.124
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
224.874
|
4.321
|
713.990
|
63.141
|
9.325
|
29.537
|
1.422
|
1677.170
|
0.000
|
46.734
|
26.706
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7.145
|
3.736
|
-3.392
|
-2.791
|
1.677
|
-4.367
|
5.727
|
-10.065
|
— |
6.838
|
— | — | — |