Hg_chrom3_TN10mRNA_6357
Organism: Heterodera glycines Gene Locus: chr3:9954316-9955719 Feature type: polypeptideProtein Sequence
Length: 248
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.75 | 1.782 | 0.88 | 0.695 | 1.008 | 1.137 | 0.624 | 2.016 | 1.075 | 1.199 | 1.161 | 0.949 | 2.352 | 1.318 | 0.658 | 0.403 | 0.859 | 0.978 | 1.241 | 0.474 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6028
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
mitochondrion
|
— | — | — | — | — | — |
1-19
|
0.993
|
1.000
|
0.000
|
0.000
|
0.136
|
0.541
|
0.049
|
0.314
|
0.387
|
0.274
|
0.111
|
0.014
|
0.404
|
0.485
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008154
|
1.000
|
1.000
|
Hsc_gene_15349.t1
|
Hsc_gene_15349.t1
|
— |
Q95003.1 Glutathione peroxidase 3 [Caenorhabditis elegans]
|
AJE31857.1 secreted glutathione peroxidase, partial [Heterodera cruciferae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004601|GO:0006979
|
GO:0008150_0.848|GO:0005575_0.797|GO:0110165_0.797|GO:0009987_0.718|GO:0050896_0.703|GO:0003674_0.682|GO:0042221_0.610|GO:0051716_0.610|GO:0005622_0.557|GO:0003824_0.555|GO:0016020_0.552|GO:0005737_0.550|GO:0070887_0.545|GO:0043226_0.505
|
IPR000889+47-243_48-222_56-221_57-173_75-92_112-128_199-208+|IPR013766+51-238+|IPR029759+77-92+|IPR029760+115-122+|IPR036249+56-234+
|
— |
PF00255+57-173+Glutathione_peroxidase
|
G3DSA:3.40.30.10:FF:000283+41-241+Glutathione_peroxidase
|
PTHR11592+48-222+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
248-248
|
1.000
|
1-247
|
2r37_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
28385.540
|
7.484
|
5.000
|
25.806
|
15.726
|
45.968
|
54.032
|
14.919
|
10.887
|
47.581
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
3699.626
|
133.487
|
19254.616
|
1173.301
|
141.179
|
564.122
|
23.915
|
19435.863
|
1167.201
|
38.034
|
521.962
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.944
|
2.997
|
-3.929
|
-3.089
|
2.012
|
-4.550
|
5.006
|
-9.526
|
4.771
|
— | — | — | — |