Hg_chrom3_TN10mRNA_6362
Organism: Heterodera glycines Gene Locus: chr3:9980220-9983255 Feature type: polypeptideProtein Sequence
Length: 431
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.836 | 1.403 | 1.308 | 0.64 | 0.928 | 0.892 | 0.608 | 0.58 | 1.289 | 1.348 | 0.914 | 2.047 | 1.418 | 0.446 | 0.9 | 1.26 | 0.799 | 1.019 | 1.606 | 0.819 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6033
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.607
|
0.177
|
0.022
|
0.625
|
0.120
|
0.230
|
0.121
|
0.021
|
0.181
|
0.152
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001202
|
4.000
|
1.000
|
Hsc_gene_15345.t1
|
— | — |
O14682.2 Ectoderm-neural cortex protein 1 [Homo sapiens]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.715|GO:0110165_0.708|GO:0008150_0.682|GO:0005622_0.631|GO:0005737_0.537|GO:0009987_0.526|GO:0043226_0.503
|
IPR000210+11-119_18-93_18-124+|IPR002083+287-421+|IPR008974+271-427+|IPR011333+1-152_3-116+|IPR011705+128-239_134-204+
|
SM00225+18-124+|SM00875+128-239+
|
PF00651+11-119+BTB/POZ_domain|PF07707+134-204+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+3-269+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-431
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.535
|
48655.520
|
4.986
|
-7.500
|
24.362
|
11.137
|
47.564
|
52.436
|
11.601
|
12.761
|
50.116
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
180.350
|
35.385
|
98.898
|
115.570
|
250.209
|
192.230
|
505.402
|
56.768
|
10.675
|
310.600
|
182.061
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.252
|
1.570
|
0.335
|
1.083
|
-0.367
|
1.408
|
-1.869
|
3.301
|
— |
3.592
|
— | — |
6.667
|
No JSON data available for plots.