Hg_chrom3_TN10mRNA_6365
Organism: Heterodera glycines Gene Locus: chr3:10002294-10003889 Feature type: polypeptideProtein Sequence
Length: 379
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.92 | 1.841 | 1.343 | 1.092 | 1.319 | 0.271 | 0.66 | 0.528 | 0.293 | 0.535 | 0.6 | 1.242 | 0.88 | 1.776 | 0.162 | 2.865 | 0.735 | 0.68 | 2.03 | 0.543 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6036
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_7777
|
— | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — |
1-18
|
0.999
|
1.000
|
0.000
|
0.000
|
0.152
|
0.092
|
0.015
|
0.499
|
0.070
|
0.085
|
0.060
|
0.070
|
0.131
|
0.894
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000200
|
7.000
|
4.000
|
Hsc_gene_15418.t1;Hsc_gene_15418.t2;Hsc_gene_15418.t3;Hsc_gene_15418.t4
|
— | — |
C0ITL3.1 Venom allergen 5 [Brachyponera chinensis]
|
QLK97561.1 venom allergen [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576
|
GO:0008150_0.900|GO:0005575_0.797|GO:0110165_0.797|GO:0016020_0.513
|
IPR001283+203-355_237-255_311-327_341-354+|IPR002413+194-210_237-255_310-329+|IPR014044+198-354_205-346+|IPR018244+312-322+|IPR035940+186-361_189-379+
|
SM00198+198-354+
|
PF00188+205-346+Cysteine-rich_secretory_protein_family
|
— |
PTHR10334+203-355+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-240
|
1.000
|
241-379
|
4nuo_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.706
|
40061.740
|
3.799
|
-38.000
|
21.108
|
8.707
|
54.617
|
45.383
|
5.805
|
15.303
|
70.185
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
10432.046
|
17.082
|
12359.951
|
607.816
|
85.162
|
244.639
|
17.026
|
15765.990
|
46299.960
|
3.608
|
19844.902
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9.273
|
5.013
|
-4.241
|
-2.870
|
1.538
|
-3.836
|
5.912
|
-9.716
|
13.141
|
-6.107
|
— | — | — |