Hg_chrom3_TN10mRNA_6366
Organism: Heterodera glycines Gene Locus: chr3:10003042-10003889 Feature type: polypeptideProtein Sequence
Length: 152
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.606 | 1.989 | 0.718 | 2.042 | 0.877 | 0.337 | 1.253 | 0.987 | 0.731 | 0.622 | 0.997 | 2.322 | 1.096 | 0.633 | 0.269 | 0.658 | 0.755 | 0.299 | 5.061 | 1.161 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6036
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_7777
|
— | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.474
|
0.337
|
0.130
|
0.482
|
0.251
|
0.040
|
0.051
|
0.172
|
0.235
|
0.588
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000200
|
7.000
|
4.000
|
Hsc_gene_15418.t1;Hsc_gene_15418.t2;Hsc_gene_15418.t3;Hsc_gene_15418.t4
|
Hsc_gene_7777.t1
|
— |
C0ITL3.1 Venom allergen 5 [Brachyponera chinensis]
|
QLK97561.1 venom allergen [Heterodera glycines]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576
|
GO:0008150_0.855|GO:0005575_0.683|GO:0110165_0.683
|
IPR001283+9-128_10-28_84-100_114-127+|IPR002413+10-28_83-102+|IPR014044+1-127_4-119+|IPR018244+85-95+|IPR035940+1-134_1-152+
|
SM00198+1-127+
|
PF00188+4-119+Cysteine-rich_secretory_protein_family
|
— |
PTHR10334+9-128+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-152
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
16789.940
|
6.200
|
-0.500
|
19.079
|
16.447
|
38.158
|
61.842
|
9.868
|
9.211
|
57.237
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
10432.046
|
17.082
|
12359.951
|
607.816
|
85.162
|
244.639
|
17.026
|
15765.990
|
46299.960
|
3.608
|
19844.902
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9.273
|
5.013
|
-4.241
|
-2.870
|
1.538
|
-3.836
|
5.912
|
-9.716
|
13.141
|
-6.107
|
— | — | — |
No JSON data available for plots.