Hg_chrom3_TN10mRNA_6371
Organism: Heterodera glycines Gene Locus: chr3:10065707-10069088 Feature type: polypeptideProtein Sequence
Length: 406
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.031 | 0.802 | 1.343 | 0.764 | 1.19 | 0.884 | 0.586 | 0.493 | 1.204 | 1.331 | 1.269 | 0.869 | 1.71 | 0.71 | 0.955 | 1.02 | 0.646 | 0.933 | 1.137 | 0.942 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6041
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.559
|
0.150
|
0.013
|
0.615
|
0.132
|
0.185
|
0.062
|
0.009
|
0.158
|
0.124
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000556
|
2.000
|
5.000
|
Hsc_gene_11805.t1;Hsc_gene_11805.t2;Hsc_gene_12273.t1;Hsc_gene_15828.t1;Hsc_gene_22685.t1
|
— | — |
Q2LE78.1 BTB/POZ domain-containing protein 6 [Xenopus laevis]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.769|GO:0110165_0.742|GO:0008150_0.729|GO:0005622_0.638|GO:0005737_0.592|GO:0009987_0.525|GO:0043226_0.523
|
IPR000210+13-117_21-93_21-124+|IPR002083+264-396_267-385_269-375+|IPR008974+256-403+|IPR011333+2-150_6-117+|IPR011705+128-239_134-204+
|
SM00061+269-375+|SM00225+21-124+|SM00875+128-239+
|
PF00651+13-117+BTB/POZ_domain|PF07707+134-204+BTB_And_C-terminal_Kelch|PF22486+267-385+MATH_domain
|
— |
PTHR45774+5-223+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-406
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.512
|
45907.510
|
5.402
|
-4.000
|
28.571
|
11.823
|
46.552
|
53.448
|
14.039
|
14.532
|
47.783
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
brown
|
12.566
|
8.180
|
22.410
|
20.831
|
22.914
|
8.748
|
43.974
|
9.443
|
4.306
|
0.560
|
2.165
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.216
|
1.211
|
— | — |
-1.373
|
2.335
|
— |
2.360
|
— | — | — | — | — |
No JSON data available for plots.