Hg_chrom3_TN10mRNA_6372
Organism: Heterodera glycines Gene Locus: chr3:10073437-10075560 Feature type: polypeptideProtein Sequence
Length: 374
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.933 | 1.555 | 1.118 | 1.106 | 1.159 | 0.96 | 0.446 | 0.267 | 1.604 | 1.265 | 1.134 | 1.258 | 1.931 | 0.566 | 1.146 | 1.146 | 0.614 | 0.567 | 1.44 | 0.55 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6042
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.336
|
0.434
|
0.026
|
0.615
|
0.214
|
0.110
|
0.106
|
0.039
|
0.135
|
0.127
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001221
|
4.000
|
1.000
|
Hsc_gene_15390.t1
|
— | — | — |
KAI3415282.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.772|GO:0110165_0.767|GO:0005622_0.677|GO:0005737_0.613|GO:0008150_0.599|GO:0043226_0.566|GO:0043229_0.553
|
IPR000210+12-59+|IPR002083+218-307+|IPR008974+209-312+|IPR011333+1-105_15-60+|IPR011705+82-193_85-190+
|
SM00875+82-193+
|
PF00651+12-59+BTB/POZ_domain|PF07707+85-190+BTB_And_C-terminal_Kelch|PF22486+218-307+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+104-201+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+15-191+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-374
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.668
|
42802.030
|
6.961
|
1.000
|
26.738
|
11.230
|
48.930
|
51.070
|
13.636
|
13.102
|
46.257
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
magenta
|
7.059
|
6.538
|
7.364
|
5.965
|
7.966
|
3.767
|
9.734
|
4.368
|
1.028
|
12.975
|
7.854
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.380
|
— |
1.295
|
— | — | — | — | — |
No JSON data available for plots.