SCN Proteipedia

Hg_chrom3_TN10mRNA_6373

Organism: Heterodera glycines Gene Locus: chr3:10082107-10088254 Feature type: polypeptide

Protein Sequence

Length: 810

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.919	0.775	0.898	0.681	0.988	0.886	0.794	1.173	1.427	0.884	0.954	1.816	1.955	0.665	1.461	1.041	0.951	1.029	1.235	0.581	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_6043	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KGKRGKRGGAQARKVRT	34-57	0.747	—	—	—	—	0.000	—	—	0.342	0.301	0.024	0.367	0.208	0.070	0.105	0.015	0.218	0.102

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	—	—	—	—	Hsc_gene_20825.t1	—	P18907.1 Sodium/potassium-transporting ATPase subunit alpha-1 [Equus caballus]	KAI1704486.1 e1-E2 ATPase domain-containing protein [Ditylenchus destructor]	No	0.010

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0004176\|GO:0004222\|GO:0005215\|GO:0005524\|GO:0006486\|GO:0006508\|GO:0016020\|GO:0016758\|GO:0016887	GO:0008150_0.870\|GO:0005575_0.840\|GO:0110165_0.840\|GO:0009987_0.727\|GO:0016020_0.717\|GO:0003674_0.702\|GO:0071944_0.634\|GO:0051179_0.626\|GO:0006810_0.616\|GO:0051234_0.616\|GO:0005886_0.615\|GO:0065007_0.559\|GO:0006811_0.528\|GO:0055085_0.519\|GO:0005622_0.510\|GO:0003824_0.505	IPR000642+43-134+\|IPR001757+328-435_330-346_358-374+\|IPR002659+595-730+\|IPR006068+441-501+\|IPR023214+263-395+\|IPR023298+405-492+\|IPR023299+236-262+\|IPR036412+254-427+\|IPR037219+33-199_41-193+\|IPR050510+235-501+	—	PF00689+441-501+Cation_transporting_ATPase,_C-terminus\|PF00702+261-372+haloacid_dehalogenase-like_hydrolase\|PF01434+43-134+Peptidase_family_M41\|PF01762+595-730+Galactosyltransferase	—	PTHR43294+235-501+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-51	1.000	52-810	4xe5_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.798	91612.390	9.485	30.500	26.667	12.963	46.543	53.457	15.802	10.864	48.148

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	184.638	417.930	322.649	261.239	230.784	208.583	265.276	217.898	108.567	4.730	49.232

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.603	-0.815	-0.196	-0.211	—	0.358	—	0.427	—	—	6.491	—	—

No JSON data available for plots.

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