Hg_chrom3_TN10mRNA_6383
Organism: Heterodera glycines Gene Locus: chr3:10130711-10133381 Feature type: polypeptideProtein Sequence
Length: 443
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.814 | 1.26 | 1.067 | 0.856 | 1.58 | 0.579 | 0.699 | 0.79 | 1.405 | 1.281 | 0.992 | 1.992 | 1.693 | 0.651 | 1.013 | 0.935 | 0.555 | 0.958 | 1.215 | 0.598 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6053
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.565
|
0.223
|
0.013
|
0.631
|
0.127
|
0.177
|
0.162
|
0.006
|
0.177
|
0.136
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001985
|
2.000
|
2.000
|
Hsc_gene_15353.t1;Hsc_gene_7767.t1
|
Hsc_gene_7767.t1
|
— |
Q6GLJ1.2 BTB/POZ domain-containing protein 17 [Xenopus laevis]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.741|GO:0110165_0.723|GO:0008150_0.713|GO:0005622_0.633|GO:0005737_0.571|GO:0009987_0.522|GO:0043226_0.503
|
IPR000210+14-127_22-96_22-132+|IPR008974+286-440+|IPR011333+2-128_7-126+|IPR011705+136-247_143-246+
|
SM00225+22-132+|SM00875+136-247+
|
PF00651+14-127+BTB/POZ_domain|PF07707+143-246+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+5-268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
419-443
|
1.000
|
1-418
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.611
|
50296.650
|
4.790
|
-13.500
|
28.442
|
11.287
|
46.050
|
53.950
|
13.093
|
15.350
|
46.275
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
94.966
|
68.497
|
43.784
|
58.194
|
50.003
|
32.492
|
552.855
|
17.852
|
18.029
|
93.075
|
60.912
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.877
|
-0.373
|
0.520
|
— |
-0.608
|
4.098
|
— |
5.100
|
— | — | — | — | — |
No JSON data available for plots.