Hg_chrom3_TN10mRNA_6385
Organism: Heterodera glycines Gene Locus: chr3:10135337-10141101 Feature type: polypeptideProtein Sequence
Length: 1,231
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.699 | 0.453 | 0.31 | 0.028 | 1.083 | 3.603 | 0.193 | 0.244 | 1.625 | 0.571 | 0.837 | 0.908 | 0.451 | 2.187 | 0.779 | 0.65 | 3.143 | 0.492 | 0.375 | 1.386 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6054
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.888
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
RKMEMLQKEWKKKMD,KKKMDELDAERRRQE,KRRMAELEEAKRRREE,KRKLAELEEEKRRRLN,RRAAFGQQNQAQIDAWKRK
|
— | — | — | — |
1-23
|
0.730
|
1.000
|
0.000
|
0.000
|
0.420
|
0.165
|
0.005
|
0.701
|
0.064
|
0.102
|
0.047
|
0.023
|
0.159
|
0.239
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001226
|
2.000
|
3.000
|
Hsc_gene_7766.t1;Hsc_gene_7766.t2;Hsc_gene_7766.t3
|
— | — | — | — |
WP_242687905
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
PTHR34491+818-1223+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-612;706-1231
|
1.000
|
613-705
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.678
|
139437.860
|
9.394
|
17.000
|
18.034
|
7.311
|
57.758
|
42.242
|
9.829
|
8.205
|
49.716
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1963.701
|
31.181
|
573.248
|
133.396
|
5386.718
|
5879.372
|
612.693
|
1308.214
|
160.845
|
3248.753
|
1925.363
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.976
|
1.961
|
-1.996
|
5.304
|
— |
-3.256
|
-2.269
|
-0.956
|
— | — | — | — |
-4.753
|