Hg_chrom3_TN10mRNA_6391
Organism: Heterodera glycines Gene Locus: chr3:10163524-10164769 Feature type: polypeptideProtein Sequence
Length: 206
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.847 | 1.693 | 1.059 | 1.674 | 0.728 | 1.12 | 0.925 | 0.971 | 0.863 | 0.787 | 0.883 | 2.856 | 1.079 | 0.653 | 0.396 | 1.179 | 0.796 | 0.883 | 3.734 | 0.857 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6060
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_16464;Hsc_gene_3527
|
— | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-18
|
0.955
|
0.999
|
0.000
|
0.000
|
0.246
|
0.300
|
0.098
|
0.456
|
0.204
|
0.050
|
0.050
|
0.109
|
0.201
|
0.847
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008167
|
1.000
|
1.000
|
Hsc_gene_3527.t1
|
Hsc_gene_16464.t1;Hsc_gene_16464.t2;Hsc_gene_16464.t3;Hsc_gene_3527.t1
|
— |
P10737.3 Venom allergen 5.02 [Dolichovespula maculata]
|
AVA09705.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576
|
GO:0005575_0.773|GO:0110165_0.773|GO:0008150_0.735|GO:0016020_0.504
|
IPR001283+31-179_64-82_111-124_138-154_166-179+|IPR002413+22-38_38-58_64-82_137-156+|IPR014044+26-179_33-171+|IPR018244+139-149_166-177+|IPR035940+17-206_19-186+
|
SM00198+26-179+
|
PF00188+33-171+Cysteine-rich_secretory_protein_family
|
— |
PTHR10334+31-179+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-206
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.690
|
23102.160
|
5.219
|
-3.000
|
19.903
|
13.592
|
44.660
|
55.340
|
9.709
|
10.194
|
55.340
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
3980.797
|
4.748
|
376.281
|
36.875
|
10.462
|
839.908
|
27.432
|
33807.591
|
5669.666
|
0.000
|
2429.857
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.082
|
2.820
|
-3.242
|
-1.854
|
6.344
|
-4.919
|
5.231
|
-10.121
|
11.555
|
-7.114
|
— | — | — |