Hg_chrom3_TN10mRNA_6392
Organism: Heterodera glycines Gene Locus: chr3:10165119-10169036 Feature type: polypeptideProtein Sequence
Length: 125
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.023 | 0.744 | 0.873 | 0.552 | 1.333 | 1.231 | 0.952 | 2.0 | 1.244 | 0.973 | 1.091 | 2.353 | 0.222 | 0.462 | 1.143 | 0.914 | 0.918 | 1.212 | 0.615 | 0.941 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6061
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRQEGTDAEGNRRWKI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.555
|
0.213
|
0.012
|
0.510
|
0.165
|
0.155
|
0.099
|
0.015
|
0.480
|
0.232
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001885
|
3.000
|
1.000
|
Hsc_gene_11603.t1
|
Hsc_gene_11603.t1;Hsc_gene_16462.t1;Hsc_gene_16466.t1;Hsc_gene_16466.t2;Hsc_gene_3526.t1;Hsc_gene_7028.t1
|
— |
Q09506.1 Tax1-binding protein 3 homolog [Caenorhabditis elegans]
|
KJH45530.1 PDZ/DHR/GLGF domain protein [Dictyocaulus viviparus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.907|GO:0110165_0.898|GO:0016020_0.774|GO:0008150_0.766|GO:0005622_0.761|GO:0009987_0.682|GO:0005737_0.619|GO:0043226_0.613|GO:0071944_0.590|GO:0003674_0.581|GO:0005886_0.573|GO:0043229_0.546|GO:0005488_0.533|GO:0065007_0.507
|
IPR001478+18-104_34-112_36-116_56-112+|IPR036034+8-115_35-116+|IPR050614+38-118+
|
SM00228+36-116+
|
PF00595+34-112+PDZ_domain
|
— |
PTHR23119+38-118+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
123-125
|
1.000
|
1-122
|
2vz5_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.619
|
13855.790
|
7.383
|
2.500
|
29.600
|
8.800
|
49.600
|
50.400
|
16.800
|
12.800
|
48.800
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
red
|
153.511
|
58.438
|
154.047
|
103.617
|
140.968
|
206.859
|
287.710
|
384.210
|
37.642
|
142.437
|
97.525
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.169
|
0.689
|
-0.464
|
0.411
|
0.570
|
0.487
|
0.793
|
— | — | — | — | — | — |
No JSON data available for plots.