Hg_chrom3_TN10mRNA_6395
Organism: Heterodera glycines Gene Locus: chr3:10181286-10184239 Feature type: polypeptideProtein Sequence
Length: 377
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.11 | 0.617 | 1.061 | 0.274 | 0.442 | 1.7 | 0.695 | 0.398 | 0.472 | 0.502 | 1.969 | 1.092 | 0.516 | 3.316 | 0.758 | 1.099 | 0.826 | 0.884 | 0.204 | 0.858 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6063
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKKR,KKRP,GKGKAVSRPPPPSSGKKTDAKTKAVSRPPPPPAKKTDKGKVVPPPRRPPPSGKKPFVKAKTLSPRFPSPFTKK
|
— | — |
49-90
|
0.995
|
— | — |
0.000
|
— | — |
0.212
|
0.075
|
0.017
|
0.599
|
0.071
|
0.312
|
0.189
|
0.006
|
0.487
|
0.329
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000405
|
7.000
|
1.000
|
Hsc_gene_16330.t1
|
Hsc_gene_16330.t1;Hsc_gene_7079.t1
|
— | — | — |
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-377
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.877
|
40546.410
|
10.585
|
32.500
|
25.995
|
5.836
|
48.011
|
51.989
|
17.507
|
8.488
|
60.477
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
214.622
|
8.741
|
32.633
|
44.180
|
173.927
|
652.007
|
146.806
|
566.845
|
7.068
|
324.243
|
188.311
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.668
|
2.202
|
0.548
|
1.947
|
1.921
|
-2.141
|
— |
-1.802
|
-5.622
|
— | — | — | — |
No JSON data available for plots.