Hg_chrom3_TN10mRNA_6399
Organism: Heterodera glycines Gene Locus: chr3:10192993-10196465 Feature type: polypeptideProtein Sequence
Length: 322
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.686 | 1.083 | 0.903 | 1.178 | 1.76 | 1.194 | 0.924 | 1.708 | 1.242 | 1.091 | 1.459 | 1.096 | 1.725 | 0.478 | 0.951 | 0.843 | 0.509 | 0.659 | 0.717 | 0.548 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6066
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRIGELEKEIKEQRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.724
|
0.067
|
0.007
|
0.560
|
0.124
|
0.121
|
0.045
|
0.035
|
0.064
|
0.164
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001227
|
1.000
|
4.000
|
Hsc_gene_20818.t1;Hsc_gene_22689.t1;Hsc_gene_22689.t2;Hsc_gene_22689.t3
|
Hsc_gene_22689.t3
|
— | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.803|GO:0005575_0.695|GO:0110165_0.695|GO:0005622_0.654|GO:0005737_0.555|GO:0009987_0.530
|
IPR001870+108-314+|IPR003877+202-313_225-311+|IPR013320+159-314+|IPR043136+135-321+|IPR044736+207-310+
|
SM00449+202-313+
|
PF00622+225-311+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-62
|
1.000
|
63-322
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.559
|
36696.680
|
6.708
|
1.500
|
33.230
|
12.422
|
51.553
|
48.447
|
17.702
|
15.528
|
42.547
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
64.286
|
21.710
|
22.166
|
31.851
|
46.276
|
29.575
|
273.851
|
18.420
|
25.323
|
95.814
|
65.604
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.634
|
0.508
|
— |
3.224
|
— |
4.040
|
— | — | — | — | — |
No JSON data available for plots.