Hg_chrom3_TN10mRNA_6403
Organism: Heterodera glycines Gene Locus: chr3:10214196-10214960 Feature type: polypeptideProtein Sequence
Length: 98
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.356 | 1.187 | 0.928 | 1.407 | 1.701 | 0.262 | 0.85 | 0.0 | 1.134 | 0.827 | 2.01 | 1.2 | 2.551 | 0.196 | 0.416 | 1.166 | 1.171 | 0.928 | 1.57 | 0.6 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6070
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.435
|
0.314
|
0.040
|
0.252
|
0.142
|
0.112
|
0.028
|
0.005
|
0.216
|
0.176
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003680
|
2.000
|
1.000
|
Hsc_gene_20819.t1
|
— | — | — |
XP_048248684.1 ubiquitin carboxyl-terminal hydrolase 7-like isoform X4 [Haliotis rufescens]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.906|GO:0009987_0.846|GO:0065007_0.810|GO:0050789_0.796|GO:0003674_0.776|GO:0005575_0.751|GO:0110165_0.741|GO:0065008_0.689|GO:0031647_0.670|GO:0005622_0.666|GO:0003824_0.663|GO:0016787_0.659|GO:0140096_0.656|GO:0008233_0.654|GO:0004843_0.650|GO:0008234_0.650|GO:0019783_0.650|GO:0101005_0.650|GO:0005737_0.636|GO:0016020_0.633|GO:0043226_0.628|GO:0043229_0.618|GO:0043227_0.572|GO:0043231_0.572|GO:0050794_0.552|GO:0005488_0.546|GO:0005515_0.531|GO:0071840_0.509|GO:0016043_0.505
|
IPR002083+1-87_3-87+|IPR008974+1-96+
|
— |
PF22486+3-87+MATH_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-98
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.670
|
11213.840
|
6.298
|
0.000
|
30.612
|
13.265
|
52.041
|
47.959
|
15.306
|
15.306
|
46.939
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
red
|
13.293
|
5.979
|
3.083
|
9.443
|
21.188
|
7.929
|
3.947
|
3.051
|
2.410
|
35.866
|
21.528
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.192
|
— |
1.729
|
1.137
|
-1.405
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.