Hg_chrom3_TN10mRNA_6405
Organism: Heterodera glycines Gene Locus: chr3:10232439-10237197 Feature type: polypeptideProtein Sequence
Length: 613
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.55 | 1.821 | 1.275 | 0.394 | 0.87 | 1.004 | 0.893 | 0.897 | 1.776 | 0.926 | 1.013 | 0.96 | 2.175 | 0.627 | 0.766 | 1.328 | 0.829 | 0.742 | 1.004 | 0.672 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6072
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.500
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.279
|
0.056
|
0.002
|
0.215
|
0.565
|
0.243
|
0.192
|
0.107
|
0.443
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000304
|
6.000
|
3.000
|
Hsc_gene_22683.t1;Hsc_gene_22683.t2;Hsc_gene_9704.t1
|
Hsc_gene_20823.t1;Hsc_gene_20823.t2;Hsc_gene_20823.t3;Hsc_gene_20823.t4
|
— | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.789|GO:0005575_0.501
|
IPR001870+224-412_408-601+|IPR003877+290-411_293-409_477-600_480-598+|IPR013320+233-412_424-601+|IPR043136+228-420_422-610+|IPR044736+277-408_462-597+|IPR050618+210-413+
|
SM00449+290-411_477-600+
|
PF00622+293-409_480-598+SPRY_domain
|
— |
PTHR12864+210-413+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-58
|
1.000
|
59-613
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
68876.390
|
5.689
|
-5.500
|
24.470
|
13.214
|
50.571
|
49.429
|
12.235
|
12.235
|
50.734
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
136.582
|
28.177
|
79.072
|
56.825
|
604.438
|
360.679
|
77.015
|
78.427
|
22.915
|
98.623
|
66.177
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.255
|
0.875
|
-0.365
|
3.378
|
-0.727
|
-2.223
|
-2.313
|
— | — | — | — | — | — |
No JSON data available for plots.