Hg_chrom3_TN10mRNA_6406
Organism: Heterodera glycines Gene Locus: chr3:10243520-10248875 Feature type: polypeptideProtein Sequence
Length: 712
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.702 | 1.502 | 0.894 | 1.065 | 1.311 | 0.612 | 0.502 | 0.913 | 1.81 | 1.139 | 1.341 | 1.239 | 1.99 | 0.594 | 0.946 | 1.144 | 0.691 | 0.681 | 1.404 | 0.661 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6073
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.558
|
0.211
|
0.010
|
0.566
|
0.134
|
0.243
|
0.070
|
0.083
|
0.135
|
0.148
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008169
|
1.000
|
1.000
|
Hsc_gene_22688.t1
|
— | — |
Q0V9W6.2 BTB/POZ domain-containing protein 6 [Xenopus tropicalis]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.789|GO:0110165_0.789|GO:0005622_0.706|GO:0008150_0.669|GO:0043226_0.622|GO:0043229_0.606|GO:0009987_0.577|GO:0005737_0.550|GO:0016020_0.536
|
IPR000210+18-125_25-98_25-129+|IPR002083+286-398_287-389_424-551_429-531_453-533_571-679_588-702_590-702+|IPR008974+278-413_414-558_559-709+|IPR011333+1-156_5-123+|IPR011705+134-241_136-238+
|
SM00061+287-389_429-531_571-679+|SM00225+25-129+|SM00875+134-241+
|
PF00651+18-125+BTB/POZ_domain|PF00917+453-533_590-702+MATH_domain|PF07707+136-238+BTB_And_C-terminal_Kelch|PF22486+286-398+MATH_domain
|
— |
PTHR45774+6-281+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-712
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.724
|
81916.280
|
7.919
|
11.500
|
28.090
|
13.062
|
49.157
|
50.843
|
15.309
|
12.781
|
44.522
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
84.444
|
33.157
|
66.352
|
67.981
|
217.173
|
170.214
|
39.633
|
131.381
|
24.230
|
79.061
|
55.562
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.772
|
0.899
|
— |
1.644
|
-0.336
|
-2.095
|
-0.476
|
-1.590
|
— | — | — | — | — |
No JSON data available for plots.