Hg_chrom3_TN10mRNA_6407
Organism: Heterodera glycines Gene Locus: chr3:10251712-10255347 Feature type: polypeptideProtein Sequence
Length: 586
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.694 | 1.191 | 1.055 | 1.0 | 1.678 | 0.919 | 0.67 | 0.427 | 1.669 | 1.153 | 1.241 | 1.706 | 1.801 | 0.492 | 0.731 | 1.097 | 0.587 | 0.724 | 1.444 | 0.703 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6074
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.741
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.519
|
0.190
|
0.017
|
0.589
|
0.186
|
0.185
|
0.051
|
0.013
|
0.170
|
0.136
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003680
|
2.000
|
1.000
|
Hsc_gene_20819.t1
|
— | — |
Q9Y2F9.1 BTB/POZ domain-containing protein 3 [Homo sapiens]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.770|GO:0110165_0.769|GO:0005622_0.702|GO:0008150_0.679|GO:0005737_0.652|GO:0009987_0.595|GO:0043226_0.552|GO:0043229_0.542|GO:0003674_0.518
|
IPR000210+18-126_25-98_25-129+|IPR002083+294-427_296-408_297-429_447-575_450-575_452-556+|IPR008974+288-435_436-584+|IPR011333+1-155_4-123+|IPR011705+133-243_136-237+
|
SM00061+296-408_452-556+|SM00225+25-129+|SM00875+133-243+
|
PF00651+18-126+BTB/POZ_domain|PF07707+136-237+BTB_And_C-terminal_Kelch|PF22486+297-429_450-575+MATH_domain
|
— |
PTHR45774+7-283+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-586
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.638
|
66971.500
|
4.624
|
-21.500
|
28.498
|
11.604
|
48.464
|
51.536
|
12.628
|
15.870
|
44.027
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
53.215
|
15.517
|
13.082
|
79.239
|
201.640
|
133.606
|
28.713
|
28.580
|
5.893
|
40.755
|
25.814
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.218
|
2.713
|
1.315
|
-0.578
|
-2.208
|
-2.341
|
— | — |
3.956
|
— | — | — |
No JSON data available for plots.