Hg_chrom3_TN10mRNA_6408
Organism: Heterodera glycines Gene Locus: chr3:10260675-10264295 Feature type: polypeptideProtein Sequence
Length: 367
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.919 | 0.887 | 1.387 | 0.94 | 1.181 | 0.699 | 0.584 | 0.545 | 1.453 | 1.326 | 1.239 | 1.122 | 1.362 | 0.734 | 0.89 | 1.09 | 0.581 | 1.073 | 1.048 | 0.882 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6075
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.490
|
0.148
|
0.025
|
0.584
|
0.175
|
0.142
|
0.134
|
0.035
|
0.132
|
0.146
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000556
|
2.000
|
5.000
|
Hsc_gene_11805.t1;Hsc_gene_11805.t2;Hsc_gene_12273.t1;Hsc_gene_15828.t1;Hsc_gene_22685.t1
|
— | — |
Q96KE9.4 BTB/POZ domain-containing protein 6 [Homo sapiens]
|
KAI3417397.1 BTB (POZ) domain containing 6 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.743|GO:0110165_0.708|GO:0005622_0.652|GO:0008150_0.646|GO:0043226_0.577|GO:0043229_0.560|GO:0005737_0.556|GO:0003674_0.542
|
IPR000210+13-119_21-95_21-126+|IPR002083+245-346+|IPR008974+231-364+|IPR011333+1-124_6-119+|IPR011705+99-212+
|
SM00225+21-126+|SM00875+99-212+
|
PF00651+13-119+BTB/POZ_domain|PF22486+245-346+MATH_domain
|
— |
PTHR45774+142-250+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-367
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.529
|
41261.380
|
5.088
|
-6.000
|
28.338
|
10.354
|
46.049
|
53.951
|
13.624
|
14.714
|
49.046
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
78.966
|
33.186
|
107.082
|
83.637
|
128.879
|
47.013
|
121.305
|
24.494
|
24.510
|
122.497
|
80.503
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.458
|
1.197
|
— |
0.592
|
-1.440
|
1.379
|
-1.044
|
2.450
|
— | — | — | — | — |
No JSON data available for plots.