Hg_chrom3_TN10mRNA_6409
Organism: Heterodera glycines Gene Locus: chr3:10274747-10277830 Feature type: polypeptideProtein Sequence
Length: 579
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.904 | 1.285 | 1.13 | 0.834 | 1.526 | 0.576 | 0.596 | 0.691 | 1.497 | 1.144 | 1.282 | 1.016 | 1.679 | 0.565 | 0.74 | 1.11 | 0.68 | 0.89 | 1.461 | 0.762 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6076
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.875
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.575
|
0.211
|
0.017
|
0.609
|
0.197
|
0.193
|
0.068
|
0.023
|
0.158
|
0.157
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
Hsc_gene_16955.t1
|
— |
Q2LE78.1 BTB/POZ domain-containing protein 6 [Xenopus laevis]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.764|GO:0110165_0.764|GO:0008150_0.665|GO:0005622_0.656|GO:0009987_0.550|GO:0005737_0.541|GO:0043226_0.532|GO:0043229_0.520
|
IPR000210+2-110_11-88_11-119+|IPR002083+278-413_282-415_283-394_438-568_439-547+|IPR008974+270-423_424-576+|IPR011333+1-145_2-110+|IPR011705+123-233_126-230+
|
SM00061+283-394_439-547+|SM00225+11-119+|SM00875+123-233+
|
PF00651+2-110+BTB/POZ_domain|PF07707+126-230+BTB_And_C-terminal_Kelch|PF22486+282-415_438-568+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+145-251+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+3-254+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-579
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.570
|
65559.590
|
4.872
|
-15.000
|
28.843
|
11.917
|
48.532
|
51.468
|
13.472
|
15.371
|
47.668
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
192.086
|
80.538
|
225.069
|
51.881
|
68.156
|
40.013
|
67.988
|
55.185
|
50.196
|
581.919
|
354.038
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.251
|
-0.772
|
-2.006
|
0.362
|
-0.754
|
0.773
|
— |
0.441
|
— | — | — | — | — |
No JSON data available for plots.