Hg_chrom3_TN10mRNA_6411
Organism: Heterodera glycines Gene Locus: chr3:10305119-10308497 Feature type: polypeptideProtein Sequence
Length: 638
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.857 | 1.166 | 1.339 | 0.811 | 2.09 | 0.804 | 0.56 | 0.705 | 1.463 | 1.123 | 1.092 | 0.922 | 1.742 | 0.603 | 0.832 | 0.985 | 0.694 | 0.617 | 0.723 | 0.83 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6078
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.480
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.546
|
0.220
|
0.015
|
0.690
|
0.147
|
0.224
|
0.081
|
0.018
|
0.164
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001986
|
1.000
|
3.000
|
Hsc_gene_16033.t1;Hsc_gene_17322.t1;Hsc_gene_17322.t2
|
— | — |
A9JRD8.2 BTB/POZ domain-containing protein 6-A [Danio rerio]
|
KAI3415278.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.752|GO:0110165_0.750|GO:0005622_0.716|GO:0008150_0.666|GO:0005737_0.609|GO:0009987_0.605|GO:0043226_0.582|GO:0043229_0.564
|
IPR000210+43-146_44-121_44-152+|IPR002083+491-625_495-613+|IPR008974+310-480_481-634+|IPR011333+14-178_28-146+|IPR011705+156-266_166-262+
|
SM00225+44-152+|SM00875+156-266+
|
PF00651+43-146+BTB/POZ_domain|PF07707+166-262+BTB_And_C-terminal_Kelch|PF22486+495-613+MATH_domain
|
— |
PTHR45774+27-292+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22;368-414
|
2.000
|
23-367;415-638
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.900
|
72845.490
|
4.277
|
-50.500
|
32.602
|
11.442
|
51.881
|
48.119
|
12.696
|
19.906
|
45.141
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
61.148
|
33.623
|
22.888
|
17.938
|
18.374
|
10.503
|
99.030
|
5.927
|
22.838
|
172.288
|
108.238
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.781
|
-1.044
|
— | — |
-0.792
|
3.243
|
— |
4.205
|
— | — | — | — | — |
No JSON data available for plots.