Hg_chrom3_TN10mRNA_6415
Organism: Heterodera glycines Gene Locus: chr3:10327994-10332202 Feature type: polypeptideProtein Sequence
Length: 872
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.293 | 1.28 | 0.917 | 1.068 | 1.261 | 1.029 | 0.56 | 0.688 | 0.917 | 0.496 | 1.095 | 0.607 | 0.542 | 1.367 | 0.421 | 1.769 | 2.03 | 0.487 | 0.882 | 0.371 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6082
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-21
|
0.987
|
1.000
|
0.000
|
0.000
|
0.221
|
0.070
|
0.018
|
0.311
|
0.042
|
0.064
|
0.037
|
0.028
|
0.232
|
0.836
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_22671.t1
|
— | — |
XP_016116237.1 PREDICTED: macrophage mannose receptor 1-like [Sinocyclocheilus grahami]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.823|GO:0110165_0.823|GO:0016020_0.722|GO:0071944_0.701|GO:0005886_0.666|GO:0008150_0.641|GO:0050896_0.512|GO:0003674_0.506
|
IPR001304+483-650_491-640_503-651_701-867_709-857_721-868+|IPR016186+395-656_687-868+|IPR016187+480-653_699-870+|IPR018378+625-649_842-866+|IPR050111+474-653+
|
SM00034+483-650_701-867+
|
PF00059+503-651_721-868+Lectin_C-type_domain
|
— |
PTHR22803+474-653+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
79-470
|
2.000
|
1-78;471-872
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.731
|
92271.040
|
4.761
|
-23.000
|
23.280
|
5.734
|
57.569
|
42.431
|
10.665
|
12.615
|
64.564
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkgreen
|
290.804
|
4.567
|
65.380
|
795.810
|
52.998
|
6.046
|
15.212
|
9.760
|
1111.112
|
82.768
|
523.487
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.613
|
7.303
|
3.709
|
-3.941
|
-3.121
|
— | — | — |
3.739
|
— | — | — | — |