Hg_chrom3_TN10mRNA_6416
Organism: Heterodera glycines Gene Locus: chr3:10332956-10336998 Feature type: polypeptideProtein Sequence
Length: 432
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.915 | 1.13 | 0.8 | 0.798 | 0.502 | 1.603 | 0.386 | 0.81 | 1.595 | 1.47 | 0.491 | 2.042 | 1.35 | 0.935 | 1.276 | 1.29 | 0.797 | 0.947 | 1.781 | 0.953 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6083
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.077
|
0.058
|
0.011
|
0.137
|
0.414
|
0.222
|
0.153
|
0.026
|
0.817
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008173
|
1.000
|
1.000
|
Hsc_gene_22669.t1
|
Hsc_gene_22669.t1
|
— |
Q9U320.1 G-protein coupled receptor daf-38 [Caenorhabditis elegans]
|
KAH7721895.1 CBN-GNRR-8 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.928|GO:0065007_0.799|GO:0005575_0.782|GO:0110165_0.782|GO:0009987_0.779|GO:0050789_0.727|GO:0016020_0.697|GO:0050896_0.682|GO:0050794_0.678|GO:0071944_0.661|GO:0003674_0.653|GO:0051716_0.652|GO:0005886_0.642|GO:0023052_0.614|GO:0007154_0.613|GO:0007165_0.592
|
IPR000276+46-418_58-79_103-125_139-160_209-232_361-385_400-426+|IPR017452+29-418+
|
— |
PF00001+46-418+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24230+16-427+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-432
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.805
|
49224.100
|
8.886
|
12.500
|
18.519
|
12.037
|
43.519
|
56.481
|
11.111
|
7.407
|
47.685
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
238.494
|
337.284
|
906.396
|
259.160
|
84.656
|
85.619
|
147.647
|
587.958
|
67.695
|
89.370
|
80.080
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.198
|
-0.518
|
-1.699
|
-1.648
|
— |
0.796
|
2.680
|
-1.853
|
— | — | — | — | — |
No JSON data available for plots.