Hg_chrom3_TN10mRNA_6417
Organism: Heterodera glycines Gene Locus: chr3:10344942-10349869 Feature type: polypeptideProtein Sequence
Length: 701
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.713 | 1.427 | 1.089 | 0.935 | 1.403 | 0.805 | 0.662 | 0.713 | 1.49 | 1.292 | 1.232 | 1.427 | 1.823 | 0.576 | 0.932 | 0.978 | 0.819 | 0.692 | 1.207 | 0.462 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6084
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.624
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.625
|
0.152
|
0.007
|
0.597
|
0.110
|
0.089
|
0.042
|
0.070
|
0.084
|
0.152
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008174
|
1.000
|
1.000
|
Hsc_gene_22667.t1
|
— | — |
Q9XHZ8.1 BTB/POZ domain-containing protein At1g21780 [Arabidopsis thaliana]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.800|GO:0110165_0.788|GO:0005622_0.751|GO:0008150_0.747|GO:0009987_0.631|GO:0005737_0.630|GO:0043226_0.619|GO:0043229_0.605|GO:0003674_0.569|GO:0016020_0.543
|
IPR000210+13-121_19-95_19-126+|IPR002083+289-421_291-402_294-422_441-574_443-554_445-561+|IPR008974+280-429_430-569_570-695+|IPR011333+1-152_2-120+|IPR011705+130-240_136-236+
|
SM00061+291-402_443-554+|SM00225+19-126+|SM00875+130-240+
|
PF00651+13-121+BTB/POZ_domain|PF07707+136-236+BTB_And_C-terminal_Kelch|PF22486+294-422_445-561+MATH_domain
|
— |
PTHR45774+4-265+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
687-701
|
1.000
|
1-686
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.552
|
79785.250
|
5.540
|
-7.000
|
28.531
|
11.127
|
49.643
|
50.357
|
14.123
|
14.408
|
45.934
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
paleturquoise
|
439.094
|
79.966
|
182.961
|
187.974
|
174.557
|
238.708
|
265.384
|
65.824
|
1104.575
|
644.341
|
841.584
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.965
|
1.096
|
— | — |
0.467
|
— |
-1.965
|
2.152
|
— | — | — | — | — |
No JSON data available for plots.