Hg_chrom3_TN10mRNA_6418
Organism: Heterodera glycines Gene Locus: chr3:10351135-10354134 Feature type: polypeptideProtein Sequence
Length: 578
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.946 | 1.529 | 1.007 | 1.074 | 1.182 | 0.887 | 0.68 | 0.779 | 1.73 | 1.286 | 1.18 | 0.814 | 1.682 | 0.566 | 0.953 | 1.112 | 0.709 | 0.55 | 0.932 | 0.509 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6085
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.372
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.675
|
0.189
|
0.009
|
0.493
|
0.149
|
0.083
|
0.064
|
0.112
|
0.116
|
0.141
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003681
|
2.000
|
1.000
|
Hsc_gene_22666.t1
|
Hsc_gene_22666.t1;Hsc_gene_3939.t1
|
— |
A9JRD8.2 BTB/POZ domain-containing protein 6-A [Danio rerio]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.775|GO:0110165_0.775|GO:0005622_0.723|GO:0008150_0.701|GO:0005737_0.623|GO:0009987_0.583|GO:0043226_0.572|GO:0043229_0.551
|
IPR000210+6-109_8-75_8-114+|IPR002083+272-408_277-389_277-400_429-561_434-542_452-560+|IPR008974+262-416_417-572+|IPR011333+1-140_4-109+|IPR011705+118-228_122-225+
|
SM00061+277-389_434-542+|SM00225+8-114+|SM00875+118-228+
|
PF00651+6-109+BTB/POZ_domain|PF07707+122-225+BTB_And_C-terminal_Kelch|PF22486+277-400_452-560+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+140-246+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+1-260+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
577-578
|
1.000
|
1-576
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.711
|
64823.060
|
7.077
|
3.500
|
26.644
|
10.554
|
48.789
|
51.211
|
14.014
|
12.630
|
47.751
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
302.675
|
186.375
|
212.852
|
123.898
|
155.936
|
243.487
|
316.549
|
95.632
|
48.555
|
787.262
|
470.673
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.726
|
-0.669
|
0.299
|
0.658
|
0.386
|
-1.459
|
1.868
|
-4.116
|
— | — | — | — |
No JSON data available for plots.