Hg_chrom3_TN10mRNA_6422
Organism: Heterodera glycines Gene Locus: chr3:10384912-10386389 Feature type: polypeptideProtein Sequence
Length: 200
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.465 | 1.395 | 0.909 | 1.552 | 1.417 | 1.026 | 0.714 | 0.75 | 1.111 | 1.014 | 1.136 | 1.471 | 1.528 | 0.865 | 0.816 | 1.071 | 0.902 | 0.909 | 1.923 | 0.735 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6089
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.962
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.526
|
0.286
|
0.039
|
0.448
|
0.166
|
0.141
|
0.059
|
0.038
|
0.235
|
0.141
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003682
|
2.000
|
1.000
|
Hsc_gene_3934.t1
|
— | — |
Q6A4J8.1 Ubiquitin carboxyl-terminal hydrolase 7 [Mus musculus]
|
KAI3415241.1 Ubiquitin carboxyl-terminal hydrolase 7 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.932|GO:0009987_0.872|GO:0003674_0.852|GO:0005575_0.778|GO:0110165_0.776|GO:0005622_0.731|GO:0065007_0.730|GO:0050789_0.715|GO:0003824_0.709|GO:0016787_0.682|GO:0140096_0.675|GO:0043226_0.673|GO:0005737_0.670|GO:0016020_0.667|GO:0008233_0.662|GO:0043229_0.657|GO:0004843_0.650|GO:0008234_0.650|GO:0019783_0.650|GO:0101005_0.650|GO:0008152_0.647|GO:0043227_0.636|GO:0043170_0.625|GO:0043231_0.619|GO:0071840_0.598|GO:0016043_0.589|GO:0050794_0.547|GO:0005488_0.538|GO:0005634_0.528|GO:0044237_0.515|GO:0044238_0.515|GO:0009058_0.508
|
IPR002083+51-186_53-167_55-178+|IPR008974+43-197+
|
SM00061+53-167+
|
PF22486+55-178+MATH_domain
|
— |
PTHR47022+52-196+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-200
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.625
|
22856.000
|
5.367
|
-2.500
|
26.500
|
12.000
|
49.500
|
50.500
|
13.000
|
13.500
|
49.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
2770.072
|
7.690
|
17.800
|
12.276
|
20.795
|
18.719
|
24.439
|
11.305
|
795.832
|
11479.808
|
6900.961
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.982
|
— | — |
0.725
|
— | — |
-0.836
|
1.253
|
-3.955
|
-5.844
|
-8.775
|
— | — |
No JSON data available for plots.