Hg_chrom3_TN10mRNA_6423
Organism: Heterodera glycines Gene Locus: chr3:10388983-10391820 Feature type: polypeptideProtein Sequence
Length: 584
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.936 | 1.274 | 1.245 | 0.827 | 1.17 | 0.702 | 0.612 | 0.685 | 1.484 | 1.134 | 1.375 | 1.108 | 1.712 | 0.461 | 0.769 | 1.076 | 0.758 | 0.908 | 1.449 | 0.755 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6090
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.607
|
0.189
|
0.016
|
0.570
|
0.115
|
0.239
|
0.063
|
0.020
|
0.142
|
0.248
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
— | — |
Q2LE78.1 BTB/POZ domain-containing protein 6 [Xenopus laevis]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.787|GO:0110165_0.786|GO:0005622_0.691|GO:0008150_0.657|GO:0005737_0.572|GO:0043226_0.550|GO:0043229_0.538
|
IPR000210+10-119_19-96_19-127+|IPR002083+264-420_266-401_357-405_445-574_446-553+|IPR008974+254-429_430-582+|IPR011333+1-123_3-119+|IPR011705+100-219+
|
SM00061+266-401_446-553+|SM00225+19-127+|SM00875+100-219+
|
PF00651+10-119+BTB/POZ_domain|PF00917+357-405+MATH_domain|PF22486+445-574+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+131-237+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+10-118+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-584
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.565
|
66025.430
|
6.152
|
-2.000
|
28.082
|
11.986
|
48.459
|
51.541
|
14.212
|
13.870
|
48.459
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
604.621
|
32.935
|
63.168
|
192.374
|
160.017
|
64.604
|
77.874
|
53.277
|
36.060
|
2376.577
|
1373.498
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
2.410
|
1.716
|
-0.300
|
-1.293
|
— | — |
0.688
|
-6.160
|
— |
-3.535
|
— | — |
No JSON data available for plots.